Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06368 ATGTATAGCAATTTCAAGGAACAGGCGATAGAGTACGTGAAACAAGCCGTTCACGAAGACAATGCCGGAAACTACGCGAAAGCGTTTCCTTTATACATGAACGCTTTGGAGTATTTCAAGACTCATTTGAAGTACGAGAAGAACCCTAAAATCAGAGAAGCTATTACGCAGAAATTCACCGAGTATTTGCGTCGTGCTGAGGAGATCAGGGCTGTGCTTGATGACGGTGGGCCTGGTCCAGCTTCTAATGGCGATGCTGCTGTTGCTACGAGGCCCAAGAGTAAGGGTAAGGATGGTGGTGGGAAAGATGGTGATGGTGGAGGGGATGGTGAGGATCCGGAGCAGGCGAAGCTTAGGGCGGGGTTGAATTCCGCGATTATTAGGGAGAAGCCGAATGTGAAGTGGAATGATGTTGCTGGGTTGGAGAGTGCTAAACAGGCTTTGCAGGAAGCTGTTATCTTGCCTGTGAAGTTTCCGCAATTCTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTATGGACCTCCTGGAACTGGTAAATCATATTTAGCCAAGGCAGTTGCAACTGAGGCTGATTCAACATTTTTCAGATCTTGTTTCAAAGTGGATGGGTGA 621 0.4702 MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKSKGKDGGGKDGDGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFRSCFKVDG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06368 206 PANTHER AAA DOMAIN-CONTAINING 19 199 - -
Vivi2g06368 206 FunFam MIT domain protein 131 165 - -
Vivi2g06368 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 199 IPR027417 -
Vivi2g06368 206 SMART smart 2 79 IPR007330 -
Vivi2g06368 206 MobiDBLite consensus disorder prediction 91 115 - -
Vivi2g06368 206 Gene3D - 131 199 IPR027417 -
Vivi2g06368 206 Gene3D - 6 75 - -
Vivi2g06368 206 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Vivi2g06368 206 Pfam ATPase family associated with various cellular activities (AAA) 173 199 IPR003959 GO:0005524|GO:0016887
Vivi2g06368 206 MobiDBLite consensus disorder prediction 73 115 - -
Vivi2g06368 206 SUPERFAMILY MIT domain 2 81 IPR036181 -
Vivi2g06368 206 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Vivi2g06368 206 CDD MIT_VPS4 4 77 IPR045253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06368 Vivi-Chr2 199148268 199150354 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06368 111 198 Calmodulin-binding Proteins AT3G56690 41.935 9.21e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06368 K12196 - fve:101313954 364.385