Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06366 ATGGGTTTGAGGGATCAATACAATATTGTAGAAGACAAAAATCTACACCTCCAAACCCCAACTTTCATTGAATGGCTCAAACCATCTTCATCACTCTCATCATCATCTTCTCTAACTCATGAAAAAAAATTATCTCAAGAAACTTTTCAGTTTTTGCCCTTAAAAGAAGATCATGAGATGCAACAAAAGGAAGGTTTTGAAGTAAAAGAAGGAATTAAACAAGTGACTGTGACTTTGCACATTGGATTACCTAACATAGGAAGTGAGTTTGAGGATCATGGTGAGAAGAATAAGGTTTTTGATCATGTTAAGGAAGAACAAGAATTGAAGAAAAACAACATACAAGGTTTTTGTTTTAAGGAGGAGAAAAGGTTTTGGATACCAACTCCTGCTCAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATATGTAGTAAGACTTTCAATAGATACAACAATATGCAGATGCATATGTGGGGACATGGATCTGAATTTAGGAAAGGACCAGATTCACTTAAGGGAACACAACCAGCAGCAATGTTAAGGTTACCATGTTATTGTTGTGCTAATGGTTGCAAGAACAATATCAATCATCCAAGAGCAAAACCATTGAAGGATTTCAGAACTCTTCAAACTCATTATAAAAGAAAACATGGAACAAAACCGTTTACGTGTAGAAAATGTTCTAAGGCATTTGCAGTTAAAGGTGATTGGAGAACTCATGAGAAAAACTGTGGAAAGTTTTGGTATTGCACTTGCGGTTCCGATTTTAAACATAAGAGATCTCTTAAAGATCATGTTAGATCATTTGGGAAAGGTCACTCTCCTCATCCTTCTCTAGAAGGGTTTGAAGATGAGAAACAATGCAGTAATACCGGGTCCGATGATGATGAAGTTGTTCATACATGA 912 0.364 MGLRDQYNIVEDKNLHLQTPTFIEWLKPSSSLSSSSSLTHEKKLSQETFQFLPLKEDHEMQQKEGFEVKEGIKQVTVTLHIGLPNIGSEFEDHGEKNKVFDHVKEEQELKKNNIQGFCFKEEKRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCANGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFTCRKCSKAFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHVRSFGKGHSPHPSLEGFEDEKQCSNTGSDDDEVVHT 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06366 303 SUPERFAMILY beta-beta-alpha zinc fingers 210 244 IPR036236 -
Vivi2g06366 303 PANTHER ZINC FINGER PROTEIN WIP2 26 292 IPR043584 GO:0003700|GO:0010468
Vivi2g06366 303 Gene3D Classic Zinc Finger 139 162 - -
Vivi2g06366 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
Vivi2g06366 303 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Vivi2g06366 303 MobiDBLite consensus disorder prediction 268 303 - -
Vivi2g06366 303 Gene3D Classic Zinc Finger 183 273 - -
Vivi2g06366 303 FunFam Zinc finger protein WIP2 193 275 - -
Vivi2g06366 303 SMART c2h2final6 224 244 IPR013087 -
Vivi2g06366 303 SMART c2h2final6 140 162 IPR013087 -
Vivi2g06366 303 SUPERFAMILY beta-beta-alpha zinc fingers 118 163 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06366 Vivi-Chr2 199082527 199084594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06366 8 293 C2H2 Transcription Factor Family AT1G08290 56.548 4.61e-125 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g06366 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06366 - - tpra:123899635 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06366 2 199082527 199084594 Vivi2g06366 2 199082527 199084594 ECH
Vivi2g06366 2 199082527 199084594 Vivi5g02198 5 91052704 91056309 PCT