Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06357 ATGGATTCAGCTCAACATCAACATGTCCCTTATGGAATTAATCATAGGATTAACAACTCTTCATCAAGTTTAATGAATGAAGGATCTGGTTTTGATTTTGGGGAGCTAGAAGAAGCAATAGTTCTGCAAGGAGTTAAGAGTAGAAATGATGAAACAAAAGCATCTTTTTTCACGGCTAGACCTTCTGCTACACTGGAAATGTTCCCTTCTTGGCCAATGAGATTCCATCAAAACTCTACAGGAGGAAACAAATCAGGAGGGGAAAGCAGTAATTCAGCGCTATCGAGCAAAAATGAGAATCCATTTGAGGAAGAATCACCATTAAGTTGTAAAAAAGGAACATCATTTTCATCGGATAATAATAATAATAATCATAATCAGATTTTTGAAGAGCAGAATCTGCAGCTACTACAACAACAACAGAAGATGATAGGAAATGATGGTATAAGAACAGCCTCTTCATCACAGAATCAATCAGCAGAAGCAGGCAAAGAAAAGAAAAAGGGAGGTGGTTCAACTTCAGATAAGCCACTAGATGCAAAGACATTGAGACGTTTAGCACAAAACAGGGAAGCTGCAAGGAAAAGTCGTCTAAGGAAAAAGGCTTATGTTCAGCAACTAGAGTCAAGTAGATTAAAGCTTACACAATTGGAACAAGACCTTCAAAGAGCAAGATCTCAGGGTATGTTCATGGATTGGAGTGGAGGTGTTGGTGGCAATATTAGCTCCGGAGGAGCAATGTTTGACATGGAATATGGGAGATGGTTAGAAGATGACAACCGTTTATTAACGGAGTTAAGAAACGGATTACAAACCGCTTTAACAGAAAATGAAATGAGAGTAATGGTTGATGGGTATTTATGTCATTATGATCAAATATTTAGAGTGAAAGGAATCACTGCAAAAACAGATGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGTTTCCTTTGGATTGGTGGCTTTAGACCCTCTGAAATTATCACGATGTTGATTCAACAATTGGAACCACTAGCTGAGCAGCAAATAATGGGAATGTATGGACTGAGACATTCTTCACAACAAGCTGAGGAAGCTCTCTCTCAAGGACTTGATCAGTTGCAACAATCTCTTGTTGACACCATTGCTGGAGGACCACTTGTTGATGGTGTTCAACAAATGGTCGTCGCCATGGGCAAGCTTTCTAATCTCGAAGGATTTCTTCGTCAGGCTGATAATTTGAGGCAACAAACTCTTCACCAATTGTGTCGATTATTGACACTTCGTCAAGCTGCGCGCGCTTTTCTTGTTATCGGAGAATATTATGGACGACTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCATGATGAGTGATGATAACTCATGCCAAACAACCACAGACATGCAAATGGTTCAACCTTCTCAGAATCATTTCTCAAGTTTCTGA 1455 0.3973 MDSAQHQHVPYGINHRINNSSSSLMNEGSGFDFGELEEAIVLQGVKSRNDETKASFFTARPSATLEMFPSWPMRFHQNSTGGNKSGGESSNSALSSKNENPFEEESPLSCKKGTSFSSDNNNNNHNQIFEEQNLQLLQQQQKMIGNDGIRTASSSQNQSAEAGKEKKKGGGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWSGGVGGNISSGGAMFDMEYGRWLEDDNRLLTELRNGLQTALTENEMRVMVDGYLCHYDQIFRVKGITAKTDVFHLINGMWTSQAERCFLWIGGFRPSEIITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAMGKLSNLEGFLRQADNLRQQTLHQLCRLLTLRQAARAFLVIGEYYGRLRALSSLWASRPRETMMSDDNSCQTTTDMQMVQPSQNHFSSF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06357 484 MobiDBLite consensus disorder prediction 460 484 - -
Vivi2g06357 484 FunFam BZIP family transcription factor 180 229 - -
Vivi2g06357 484 SUPERFAMILY Leucine zipper domain 181 223 IPR046347 GO:0003700|GO:0006355
Vivi2g06357 484 Gene3D - 180 229 - -
Vivi2g06357 484 MobiDBLite consensus disorder prediction 149 182 - -
Vivi2g06357 484 PANTHER TRANSCRIPTION FACTOR TGA9 112 456 - -
Vivi2g06357 484 MobiDBLite consensus disorder prediction 161 182 - -
Vivi2g06357 484 SMART brlzneu 177 243 IPR004827 GO:0003700|GO:0006355
Vivi2g06357 484 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Vivi2g06357 484 Pfam bZIP transcription factor 180 222 IPR004827 GO:0003700|GO:0006355
Vivi2g06357 484 Pfam Seed dormancy control 263 337 IPR025422 GO:0006351|GO:0043565
Vivi2g06357 484 ProSiteProfiles DOG1 domain profile. 245 453 IPR025422 GO:0006351|GO:0043565
Vivi2g06357 484 MobiDBLite consensus disorder prediction 73 125 - -
Vivi2g06357 484 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Vivi2g06357 484 MobiDBLite consensus disorder prediction 73 103 - -
Vivi2g06357 484 Coils Coil 200 227 - -
Vivi2g06357 484 CDD bZIP_HBP1b-like 181 231 - -
Vivi2g06357 484 MobiDBLite consensus disorder prediction 110 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06357 Vivi-Chr2 198885683 198890405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06357 160 484 bZIP Transcription Factor Family AT1G08320 70.769 2.52e-177 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi2g06357 DOG1 8.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06357 K14431 - gmx:100775461 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06357 2 198885683 198890405 Vivi2g06357 2 198885683 198890405 ECH
Vivi2g06357 2 198885683 198890405 Vivi5g02178 5 90384521 90388155 PCT