Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06354 ATGTATCATCATCATCACCAAGCAAAAAATCTTCACTCTTCTTCAAGAATGTCAATTCCATCTGAGAGGCACATGTTTCTTCAAACTGGGAATGGATCTAGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTAAAATGGACACCCGATCTTCATGCAAGGTTTATAGAAGCTGTCAACCAGTTAGGTGGAGCTGACAAAGCTACTCCAAAAACAGTGATGAAACTCATGGGAATTCCGGGACTTACCTTATATCATCTAAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGCAACAATAATAACGTGACACACAAAATAAACACGCATTCGGCTTCGGGAACTGATGAGAGACTTTCGGATCAAACCAATGGAACTCACATCAATAAATTAACCCTTGGACCGCAACCGAATAACAACAACAACCCTTTTGGTAGAGATTTACACATAAGCGAGGCGCTGCAAATGCAGATTGAGGTTCAGAGAAGACTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATAGAGGCGCAAGGAAAATACCTTCAATCAGTGCTTGAGAAAGCTCAAGAAACACTTGGTAGACAGAACTTAGGAATAGTGGGACTTGAAGCTGCAAAAGTTCAACTTTCAGAGCTTGTATCAAAAGTATCCTCACAGTGTCTAAATTCAACATTCTCAGAAATGAAGGAGTTACAAGGCTTTTGTCCTCAACAAATACAAATCACAAACCAACCAAACGACGGCTCGATGGACAGTAGTTGCTTAACATCGAGCGAACGATCACAAAAGGAACAAGAGATCATTCAAAAAGGAGGGTTTGGTTTAAGACACTTCAACAACAACAACAGTCATGTGTTCATGGAAAGAAAAGAACAACAATTAACCGAAGCGGCGGCTTCTATGCAAAACCTTAGAAACACTGAGGTACTAAAATGGTGTGTTGATGAAGTGAAAAAGAACAGTAATTTTCTCACCCCTTTAGAAAGAAACCATGGAAACTTGTCTATGAACATTGGAGTTGAACAAAATCACTCAGATGTTGTTGGTGAGTTTCAACACAGAAACACTGCAAGAACAGAAACAATGAAATCAGTGGATGATAATAATAATAATAATAATAAGATTCAACAACAACCTTCTAATTACTTCTCAGCTTCAAGATTGGATCTAAACAGTCGTGGAGATAATAATGAAGGTGCTACAAGCTGTAAACAACTTGATTTGAATAGGTTCAGTTGGAACTGA 1284 0.3886 MYHHHHQAKNLHSSSRMSIPSERHMFLQTGNGSSDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNNNVTHKINTHSASGTDERLSDQTNGTHINKLTLGPQPNNNNNPFGRDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSTFSEMKELQGFCPQQIQITNQPNDGSMDSSCLTSSERSQKEQEIIQKGGFGLRHFNNNNSHVFMERKEQQLTEAAASMQNLRNTEVLKWCVDEVKKNSNFLTPLERNHGNLSMNIGVEQNHSDVVGEFQHRNTARTETMKSVDDNNNNNNKIQQQPSNYFSASRLDLNSRGDNNEGATSCKQLDLNRFSWN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06354 427 Coils Coil 300 320 - -
Vivi2g06354 427 Gene3D - 44 102 - -
Vivi2g06354 427 Pfam MYB-CC type transfactor, LHEQLE motif 158 204 IPR025756 -
Vivi2g06354 427 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Vivi2g06354 427 MobiDBLite consensus disorder prediction 375 394 - -
Vivi2g06354 427 Coils Coil 160 180 - -
Vivi2g06354 427 MobiDBLite consensus disorder prediction 373 394 - -
Vivi2g06354 427 FunFam Myb family transcription factor 44 102 - -
Vivi2g06354 427 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Vivi2g06354 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Vivi2g06354 427 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 311 IPR044848 GO:0003700
Vivi2g06354 427 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06354 Vivi-Chr2 198835901 198838270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06354 77 427 G2-like Transcription Factor Family AT3G04030 49.153 1.04e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi2g06354 Myb_DNA-binding 3.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06354 - - gmx:100810396 544.273