Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06336 ATGGAAGAACCACAACCTGGTTTTCGTTTCTATCCAACGGAAGAAGAGTTACTTGGTTTCTATCTACACAACCAGCTAGAAGGAAAAAAGCAAGATGAAATCAATAGAGTCATCCCTGTCATTGATATCAATGGCAAAGAGCCATGGACTCTTCCAACATTTGCAGGGGAACGGTGTCGTGGAGAAACGGAGCAATGGTTTTTCTTTTCGCCAAGACAAGAAAGAGAGATGAGAGGAGGAAGACCTAATAGGACAACATCTTGTGGGTACTGGAAAGCTACTGGCTCTCCTAGCTATGTTTACAATTCGAACAATAAAGTGATTGGGATAAAGAAAACCATGGTGTTTTACCAAGGGAAAGCTCCTTATGGAAGGAAAACTAAATGGAAGATGCATGAATATAAGGCCATTGAACACTTTGATTCATCTAACACAAATCCTCCTAAGTTGCGACACGAATTCAGCTTGTGTCGAATTTATGTGATATCGGGAAGCTTTTGTTCATTCGATCGTCGACCATTAGAGAGACCAAGAGTGGAGTTACAGCTTGATCATACTGCTTCAACAAGTGCTCAACAAATGGTACCAGAGATTGATGAATCAAATCTGCATGCAACTTTCCATTCGAAAGGAGTAGGAAGAGATCATGATGATGTTTTTATGGGAGGGTCAAGTGGTACAAAGTGGAATGATGTAGCAAAGAATGGGGTTGATGAATCTGAACCACTTTGGGAATGGGAACAACTAAATTGGATCTAA 759 0.4071 MEEPQPGFRFYPTEEELLGFYLHNQLEGKKQDEINRVIPVIDINGKEPWTLPTFAGERCRGETEQWFFFSPRQEREMRGGRPNRTTSCGYWKATGSPSYVYNSNNKVIGIKKTMVFYQGKAPYGRKTKWKMHEYKAIEHFDSSNTNPPKLRHEFSLCRIYVISGSFCSFDRRPLERPRVELQLDHTASTSAQQMVPEIDESNLHATFHSKGVGRDHDDVFMGGSSGTKWNDVAKNGVDESEPLWEWEQLNWI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06336 252 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Vivi2g06336 252 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
Vivi2g06336 252 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Vivi2g06336 252 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 185 - -
Vivi2g06336 252 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06336 Vivi-Chr2 198559749 198560873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06336 2 251 NAC Transcription Factor Family AT5G22380 52.000 1.37e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g06336 NAM 3.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06336 - - gmx:100784960 351.288