Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06324 ATGATGGAAATCGTTTCTAAAGAAGCTCAGATGTCTATTGCTGCTTCTTCCATGTTTCCTGGTTTCAGATTCTGTCCTACGGACGAAGAGTTGATTTCTTATTACCTTAGGAAGAAGTTGGATGGTCATGAAGAAAGTGTTCAAGTTATTTCTGAAGTTGAGCTTTGTACATATGAACCTTGGGATTTACCAGCCAAGTCATTCATTCAATCAGATAACGAGTGGTTCTTCTTCTCTCCGCGAGGACGAAAGTATCCAAATGGTTCGCAGAGTAAAAGAGCTACTGATTGTGGATATTGGAAAGCGACTGGAAAAGAGCGAAACGTGAAATCAGGTCCTAATGTTATAGGTACGAAGCGAACTTTAGTGTTTCATTTAGGTCGGGCACCTAAAGGCGAAAGAACAGAATGGATTATGCATGAGTATTGCATCAGTGACAGGTCTCCGGATTCTTTGGTTGTTTGTCGCCTCAAGAGGAACACCGAGTTTCGTCTGAACGATGCTTCAAAAGGAGCCTCTTCAAGTCAAATAGTCCAAGTACATTCACATGAAAGTGATTGCGCTGTCTCAGAAGAGGCCACTGATCAAAGGGAAATAGGCGTCTGTGAACAAGAAAAGGAGGTTGAGGGTAGTTCCAAGCGGGGTAGCAGCAGTTATGGTTCACCTTCAATGGAACAAAATGATTCCGTGTCTGAATCTAATCAGCGACCAGCTACTGATGCTACTTTAACAGACTCTTCAGGCCATCTAAAGATGGATGAAGAAGATTGTTATGCTGAGATACTAAAGAACGATATTATAAAATTAGATGAATCATCAATGTCTCAAGGGGTGCAAACAAGACCAAATGACATTCTACAGCCTCATCCGTGCCAAGGCACCGCGCAACGGAGAATACGATTAAGGGTTCCAAAATCAACACATGCTCAATCAGGCGTTCGTTTCTCCAGAACAATGCATCAGTCAAAGAGTTGCTTCTTTGGCCGAATGACCAACCGTTTGATGATATTTGCTTTCTTTGTTTTCACTCTCATGACTATATTTTTCTGGTTTTTATTGGATGGTCACAAACAAGTTAGAAATATTGTAGGAAAATTTCGGGCGTAA 1107 0.4146 MMEIVSKEAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCTYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATDCGYWKATGKERNVKSGPNVIGTKRTLVFHLGRAPKGERTEWIMHEYCISDRSPDSLVVCRLKRNTEFRLNDASKGASSSQIVQVHSHESDCAVSEEATDQREIGVCEQEKEVEGSSKRGSSSYGSPSMEQNDSVSESNQRPATDATLTDSSGHLKMDEEDCYAEILKNDIIKLDESSMSQGVQTRPNDILQPHPCQGTAQRRIRLRVPKSTHAQSGVRFSRTMHQSKSCFFGRMTNRLMIFAFFVFTLMTIFFWFLLDGHKQVRNIVGKFRA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06324 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 228 - -
Vivi2g06324 368 MobiDBLite consensus disorder prediction 213 246 - -
Vivi2g06324 368 MobiDBLite consensus disorder prediction 186 212 - -
Vivi2g06324 368 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Vivi2g06324 368 MobiDBLite consensus disorder prediction 186 249 - -
Vivi2g06324 368 Gene3D NAC domain 27 166 IPR036093 GO:0003677|GO:0006355
Vivi2g06324 368 Pfam No apical meristem (NAM) protein 20 143 IPR003441 GO:0003677|GO:0006355
Vivi2g06324 368 ProSiteProfiles NAC domain profile. 18 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06324 Vivi-Chr2 198364911 198367199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06324 5 284 NAC Transcription Factor Family AT2G27300 52.143 1.56e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g06324 NAM 3.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06324 - - tpra:123896537 635.18