Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06311 ATGGTTTCTAGAATGGATCAGTACGAGATCATGGAGCAGATCGGTCGCGGTGCATTTGGTGCTGCGATTCTCGTTAATCACAAGCTGGAGAAGAAAAGATACGTGTTGAAGAAAATTAGGCTTGCGCGGCAAACTGAACGGTGTAGAAGATCTGCTCATCAAGAGATGGATGTTATTGCTCGGATTAAGCACCCTCACATTGTGGAATTCAAAGAGGCTTGGGTTGAGAAGGGTTGCTATGTCTGCATTGTTATTGGATATTGTGAAGGTGGAGACATAGCAGCATTGATGAAAAAATCAAATGGGGTTTACTTTCCTGAGGAGGAACTCTGCAAATGGATTACTCAAATACTGTTGGCAGTAGAATACCTGCATTCAAAATTTGTTTTACACCGTGACCTAAAGTGCTCTAACATCTTTCTCACCAAGGATCATGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGCAGATGATTTGACTTCTTCGGTCGTAGGAACTCCCAACTACATGTGCCCTGAACTGTTTGCCGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCACCGCCCTGCTTTCAAAGCTTTTGATATGGACGGATTGATAAACAAGATAAACCGTCCCTGTATTGGTACTTTGCCTCCCTGTTACTCCCCGTCCTTGAAAATACTGATAAAAGGTATGCTAAGGAAAAACCCTGAGCATCGTCCAACCGCATCCGAAATCTTAAAGCACCCTTATTTGCAGCCTTATGTACGTCAATATTGTTCATCTCTCTGTCCTCCAGCAGCAACCTCTTCTCCTGAAAAGCCAATTTATGCTGTCCGTGGTTCTCGAAAAAATATGGTACAAAGTGAAAACAACAATAGTTCGAGAGGTGACAAAAGTAATTTGATGTTAAATGAGAGAAACATTACAGAAGCAGCACCAAAGGGTGATGACAAAATCACCGAGGTAGACATAACATCGACTGATGATGATGGGTCTGAGCTTCTAATGCATGTCGGAGAACGAAATAGATCCAGCAATTTCAATGCCAAAACAGATAAACAGGAGGTTACGAAGAAACCTCACGTTGAACACCATTCTAATGCTGGATCTAAGAAACCAAAAACAACTAAGAATGTAATGATGGCACCAAAACATGAAAAAGTTAGAGAGACAAGCCATCCAATGAGAGGCAATGGGGTGATGGCCGGAGGTACATCAATACACAAAATAAATACCGAGACATTGTCTAAATTGCCCAGACCTGATTTTGGTGTTACCGGTTTGAAGCGTAATTTAGATGTGCCAACTATTGCACCTTCAAAAGCAACCCTTAATTCTGCAAAACAAATTCAGGGGTCACGTGCTTCTGAACATCAGTTACCAATGGAATCTACACCTAAAACAAAACCTCGACATAAGGTACCATTGCCATCTGGTCCTATGAAACAAGTAGTAGCAGAAGGTGGAGCTCTTGGAAGGCCAAAACAAAAAACTCCTCCAAGTCTTCTTAAACCACCCTCATGTCTGAGAAGTATAAGGCTGGCTGAAAATAATATCCCAAATGCAGCAAATGATACAGGAAGGTTAAATCCAAATAAAATAGCTCAAGAGCCTAAGATTCATCATCAGCTGACTAATAGTCATCTACCACTTGCTTCTAGAGAGCCTTTGAAGGCTATTGAAAGTAGCACCAAAGGAATGCAAACAGGCAGAAGCAATTCCGTCTCATCATCAGTCTCTATTCAAGGGGTCGAACTTTCTGACTTTGCAACCATTTTAATTGACATGAACGAGCCAACACTTCCTGATCAAGAGAGTTTTAATCTCACCGAAAAAATGGAATCACGTCCAGACACCAATCGACCTGCTGAAAAATTGTCTGGTGAAACCTCTCCCTTCACATCAAATTTTCGGAGTTCCATTACTAGTAATGAGAACGTAAGTCCCAGGTTAACTCTGGATCACTCAGATCAACATTCTGAGGTAATGTATGCTTCTGATCACATTTTTCTCATAAATCAAATAGCTTCATCTGCTGCCTGTGAGTATGATGATCCCTCTGCCGAAGTCAAACAAGAAATCAAGGCCCTTCAAGATATTTCTGAGGATATGGCTTCAATCAATTTTCTCAAACATTCGCTTCCCATTTCTGGAGAAAAGTCTGTTTGTGAAGTTTGTCTAGTAAGTGTGCCAAATAATAAGCCTCATAATGTTCAAGATCCGAATCATAGGGGCATATCGACTCGTCATGACAAATTCATGGTGAGGGAAAGGATGTCATCAGTGGCTGAAACTGCTCCTCTGATTATATCTAACAAAATTTCAAACCAAAAAGTTTTGCAAGAAGAGAAGGAAATGTTTTTACAGAATCTAGCAACTGAAAGGCCAGCTTCTGGCCATCTTCCCCCAGCTTTTGATGATGTCATCCATGTTATACGCCATAGCAGTTACCGTATGGGAAGTGAGCTTCCAGTAAATGAATCATTGGAGATGGGAGTTACAAATGTAGATGTTGATAAACTTATCAACATTATAAAGAATGATACAGAAATACGAAACACGGGAACTCTATGGTCCCTTAATTCTTCAAATTGCTCTGAAGCTACCACTGATAATTCGGGGATCAGAAACTTGAGCTTGAAGTCAAGTATTTCTGACAATCCCGTTGTTGAAAAACAAGATGCAAAAAACCCTGATTCTCTAGTTTCAAAACCTGATTCCACTATATGTACCAAATATAGCCCTCCAGTAGCCGAAGAGGAAATACCGAAAAAAGAATTTTTGGATGTTAAATCTTCCAAGCAGAGAGCTGAGGCACTTGAAGGCCTGTTAGAATTGTCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTAAAACCCTTTGGAAAAGATAAGGTCTCCCCAAGGGAGACAGCTATTTGGTTGGCCAAAAGCTTAAAAGGGTTGATGTTTGAGGAAAGTGGGAGATGTAGTTAA 3024 0.4077 MVSRMDQYEIMEQIGRGAFGAAILVNHKLEKKRYVLKKIRLARQTERCRRSAHQEMDVIARIKHPHIVEFKEAWVEKGCYVCIVIGYCEGGDIAALMKKSNGVYFPEEELCKWITQILLAVEYLHSKFVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLTSSVVGTPNYMCPELFADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMDGLINKINRPCIGTLPPCYSPSLKILIKGMLRKNPEHRPTASEILKHPYLQPYVRQYCSSLCPPAATSSPEKPIYAVRGSRKNMVQSENNNSSRGDKSNLMLNERNITEAAPKGDDKITEVDITSTDDDGSELLMHVGERNRSSNFNAKTDKQEVTKKPHVEHHSNAGSKKPKTTKNVMMAPKHEKVRETSHPMRGNGVMAGGTSIHKINTETLSKLPRPDFGVTGLKRNLDVPTIAPSKATLNSAKQIQGSRASEHQLPMESTPKTKPRHKVPLPSGPMKQVVAEGGALGRPKQKTPPSLLKPPSCLRSIRLAENNIPNAANDTGRLNPNKIAQEPKIHHQLTNSHLPLASREPLKAIESSTKGMQTGRSNSVSSSVSIQGVELSDFATILIDMNEPTLPDQESFNLTEKMESRPDTNRPAEKLSGETSPFTSNFRSSITSNENVSPRLTLDHSDQHSEVMYASDHIFLINQIASSAACEYDDPSAEVKQEIKALQDISEDMASINFLKHSLPISGEKSVCEVCLVSVPNNKPHNVQDPNHRGISTRHDKFMVRERMSSVAETAPLIISNKISNQKVLQEEKEMFLQNLATERPASGHLPPAFDDVIHVIRHSSYRMGSELPVNESLEMGVTNVDVDKLINIIKNDTEIRNTGTLWSLNSSNCSEATTDNSGIRNLSLKSSISDNPVVEKQDAKNPDSLVSKPDSTICTKYSPPVAEEEIPKKEFLDVKSSKQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMFEESGRCS 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06311 1007 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Vivi2g06311 1007 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Vivi2g06311 1007 MobiDBLite consensus disorder prediction 357 381 - -
Vivi2g06311 1007 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06311 1007 MobiDBLite consensus disorder prediction 357 388 - -
Vivi2g06311 1007 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06311 1007 MobiDBLite consensus disorder prediction 620 634 - -
Vivi2g06311 1007 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 956 - -
Vivi2g06311 1007 CDD STKc_Nek 7 262 - -
Vivi2g06311 1007 MobiDBLite consensus disorder prediction 294 313 - -
Vivi2g06311 1007 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06311 1007 MobiDBLite consensus disorder prediction 900 919 - -
Vivi2g06311 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vivi2g06311 1007 MobiDBLite consensus disorder prediction 458 474 - -
Vivi2g06311 1007 MobiDBLite consensus disorder prediction 458 489 - -
Vivi2g06311 1007 MobiDBLite consensus disorder prediction 293 313 - -
Vivi2g06311 1007 MobiDBLite consensus disorder prediction 611 661 - -
Vivi2g06311 1007 SUPERFAMILY Protein kinase-like (PK-like) 4 289 IPR011009 -
Vivi2g06311 1007 Gene3D Transferase(Phosphotransferase) domain 1 90 333 - -
Vivi2g06311 1007 MobiDBLite consensus disorder prediction 635 661 - -
Vivi2g06311 1007 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06311 Vivi-Chr2 198102026 198108616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06311 14 273 MAP Kinase Kinase Kinase AT1G53570 31.698 4.82e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vivi2g06311 Pkinase 2.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06311 K08857 - gmx:100780141 1290.79