Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06304 ATGTATGATAGAAACCAACCAATTGATATTAGTTCCGCGGTTTTATCTCTAAACAACTCTGGTGTGCTCAAAATTGAATTTCAATATAAGAAAGAAATAATCATTTACTCTTCACCTCAACCTATAAACAATACTGTGGCTACTATGCTAGACACAGGTAACTTTGTACTTGAACAACTTCACCCCAATGGTACAAAGAGTGTAGTGTGGCAGAGTTTTGATTATCCTACAGACACTTTGGTCCCAACAATGAAGTTAGGTGTTAACCGAAAAACTGGACATAATTGGTCATTAGTTTCTTGGTTGAGTCATTCGGTACCAACTTTGGGTGAGTTTAGTCTTGAATGGGAACCAAAAGAAGGTGAACTGAACATTAAAAAACACGGGAAAGTGTATTGGAAAAGCGGAAAACTTGGAAATAGTAGATTGTTCGACAATATTCCAGCAAATGTTCAAAAAAATTATCAATACGTTATTATCTCTAACAAGGATGAAGATTCTTTCAGTTTCGAAGTTAAAGACCAGAATTATAAGATGTCCCCAGAATGGTTGCTATCCTCTTCGGGGAGGCTCGCGAGTTCGGAAGGTGAGATTGGAAATGCAGATAATTGTTATGGATTTAATAGTGATAGAGGATGCCAAAAATGGGAGGATATACCAACTTGCAGGAAGCCTGGTGAGGTGTTTGAGATAAAGATAGGCAGACCCAACACTCACTATGCTATCTTCCAAGACAATGTGAGTTATTGTTACAATGATTGCAAGATGAGTTGTTGGAGAAACTGTGGTTGCAATGGATTCCGCAAATATTATGGTAATGGAACTGGATGTATATTTTATTCATGGAATTCTACACAAGATGTTGATTTGGAGGATGACTTTAAATTTTACATATTGGGAAAGCCAACAAAGTCAGACCCAAATCACCACGGCAAAAGAAGATGGATATGGATAAGTGCAGCAATAGCAGTTGCGTTACTCATAATATGCTCACTCATTCTATGCATAGCAATAAAGAAACACAAATATGGATTTAAAGAGAAGAAAGTTAAAAGAAAGGAGAAAGAGATGCAAGAGTTGGCCGCTTCCAATGAATTATATAGTATCAAAGATCTTGAAGATGATTTCAAGGGACATGATATAAAAGTTTTTAGCTATGCATCAATTTTGGAAGCAACCATGGACTTTTCCCATGAAAACAAGTTAGGACAGGGAGGCTATGGACCTGTTTATAAGGGAATCTTGGCAACCGGGCAAGAAGTTGCTGTAAAAAGACTTTCAAAAACTTCTGGACAAGGAATTGTTGAATTCAAAAATGAATTGGTCTTGATATGTGAACTTCAACATACAAATCTTGTACAACTACTTGGTTGTTGTATTCATGAAGAAGAAAGGATTCTAATTTACGAATATATGCCAAACAAAAGCTTGGATTTCGATTTATTCGATTCTACAAAAAGGAAGTTACTCGATTGGAAGAAGCGCTTTAACATTATAGAAGGAATTGCTCAAGCATTACTCTATCTTCATAAGTATTCAAGATTAAAAATAATTCACAGAGACTTGAAAGCTAGCAACATACTTCTTGATGAGAATATGAATCCAAAAATTTCTGATTTTGGCATGGCAAGAATGTTCACCCAGCAAGAATCCACAATAAATACCAATAGGATTGTCGGGACATATGGATACATGTCCCCAGAATACGCTATGGAAGGAGTTTATTCTACAAAGTCTGATGTCTATAGCTTTGGAGTGTTGCTACTTGAAATTGTTTGTGGAAGAAAAAACAATAGCTTCTATGATGCTGATCGTCCACTAAATCTAATAGGACATGCATGGGAGCTATGGAATGATGGTGAGTATATGCAGTTAATGGATCCATCATTAAGTGACTCATTTGTTCCTGATGAAGTAAAAAGGTGCATTCATGTTGGTCTCTTATGTGTAGAGCAATACGCAAATGATCGACCTACAATGTCTGATGTTATATCAATGTTGACAAACAAACACGAACACATTACTTTACCGACAAGACCAGCATTCTATGTTAGAAAAGATATCTTTGAAGAGGAAACAACTTCTAAAGTTCTGGACACTGACACTTATTCTATAACTGGAAATTCCTCTTCGGGTGTAGAAAGGAAATAA 2151 0.3617 MYDRNQPIDISSAVLSLNNSGVLKIEFQYKKEIIIYSSPQPINNTVATMLDTGNFVLEQLHPNGTKSVVWQSFDYPTDTLVPTMKLGVNRKTGHNWSLVSWLSHSVPTLGEFSLEWEPKEGELNIKKHGKVYWKSGKLGNSRLFDNIPANVQKNYQYVIISNKDEDSFSFEVKDQNYKMSPEWLLSSSGRLASSEGEIGNADNCYGFNSDRGCQKWEDIPTCRKPGEVFEIKIGRPNTHYAIFQDNVSYCYNDCKMSCWRNCGCNGFRKYYGNGTGCIFYSWNSTQDVDLEDDFKFYILGKPTKSDPNHHGKRRWIWISAAIAVALLIICSLILCIAIKKHKYGFKEKKVKRKEKEMQELAASNELYSIKDLEDDFKGHDIKVFSYASILEATMDFSHENKLGQGGYGPVYKGILATGQEVAVKRLSKTSGQGIVEFKNELVLICELQHTNLVQLLGCCIHEEERILIYEYMPNKSLDFDLFDSTKRKLLDWKKRFNIIEGIAQALLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARMFTQQESTINTNRIVGTYGYMSPEYAMEGVYSTKSDVYSFGVLLLEIVCGRKNNSFYDADRPLNLIGHAWELWNDGEYMQLMDPSLSDSFVPDEVKRCIHVGLLCVEQYANDRPTMSDVISMLTNKHEHITLPTRPAFYVRKDIFEEETTSKVLDTDTYSITGNSSSGVERK 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06304 716 ProSiteProfiles Bulb-type lectin domain profile. 1 70 IPR001480 -
Vivi2g06304 716 PIRSF SRK 194 714 IPR024171 GO:0004674
Vivi2g06304 716 PIRSF SRK 2 201 IPR024171 GO:0004674
Vivi2g06304 716 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 361 471 - -
Vivi2g06304 716 ProSiteProfiles Protein kinase domain profile. 396 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06304 716 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 675 - -
Vivi2g06304 716 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 59 692 - -
Vivi2g06304 716 Pfam D-mannose binding lectin 3 101 IPR001480 -
Vivi2g06304 716 Pfam Protein tyrosine and serine/threonine kinase 398 666 IPR001245 GO:0004672|GO:0006468
Vivi2g06304 716 SUPERFAMILY Protein kinase-like (PK-like) 381 687 IPR011009 -
Vivi2g06304 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Vivi2g06304 716 SUPERFAMILY alpha-D-mannose-specific plant lectins 3 104 IPR036426 -
Vivi2g06304 716 CDD STKc_IRAK 402 669 - -
Vivi2g06304 716 Gene3D Transferase(Phosphotransferase) domain 1 472 679 - -
Vivi2g06304 716 Gene3D Phosphorylase Kinase; domain 1 337 471 - -
Vivi2g06304 716 Coils Coil 350 370 - -
Vivi2g06304 716 SMART serkin_6 396 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06304 Vivi-Chr2 198063900 198070558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06304 332 706 Receptor kinase-like Gene Family AT3G45860 49.610 9.24e-123 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi2g06304 PK_Tyr_Ser-Thr 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06304 - - vvo:131653519 1429.85