LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g06300	ATGGTCACAACGTCATTCTCCTTGGTAACACTCTCGTCGGTGGCTCTCCGGCTGCATCGACAAGTTTATAGGACACATAAGGTTAACTTTATCTTCATTTTTGAAACAATATTGATGATGATAAGGTTTAAAATAAAGAAACAAGTTGTATTGATATCCTACTTATGTATGTGGTGGACTACTAGTATTTGTGTTAAAGCAGGAAATGATAGTTTGAAGGCAGGGGAAAGATTGGATGCCAACGCCACTCTATGTTCTAAGCAAGGCAGGTATTGTCTGTTATTCCAAGACACAGTAAATAGCCAAGATAATTATAATTACTTGGTTATAGAAAGTAAGGGTTATTTTGGTGGTCGAGGATCAGTAATATGGATGTATGATAGAAACCAACCAATTGATATTAGTTCCGCGGTTTTATCTCTAAACAACTCTGGTGTGCTCAAAATTGAATTTCAATATAAGAAAGAAATAATCATTTACTCTTCACCTCAACCTATAAACAATACTGTGGCTACTATGCTAGACACAGGTAACTTTGTACTTGAACAACTTCACCCCAATGGTACAAAGAGTGTAGTGTGGCAGAGTTTTGATTATCCTACAGACACTTTGGTCCCAACAATGAAGTTAGGTGTTAACCGAAAAACTGGACATAATTGGTCATTAGTTTCTTGGTTGAGTCATTCGGTACCAACTTTGGGTGAGTTTAGTCTTGAATGGGAACCAAAAGAAGGTGAACTGAACATTAAAAAACACGGGAAAGTGTATTGGAAAAGCGGAAAACTTGGAAATAGTAGATTGTTCGACAATATTCCAGCAAATGTTCAAAAAAATTATCAATACGTTATTATCTCTAACAAGGATGAAGATTCTTTCAGTTTCGAAGTTAAAGACCAGAATTATAAGATGTCCCCAGAATGGTTGCTATCCTCTTCGGGGAGGCTCGCGAGTTCGGAAGGTGAGATTGGAAATGCAGATAATTGTTATGGATTTAATAGTGATAGAGGATGCCAAAAATGGGAGGATATACCAACTTGCAGGAAGCCTGGTGAGGTGTTTGAGATAAAGATAGGCAGACCCAACACTCACTATGCTATCTTCCAAGACAATGTGAGTTATTGTTACAATGATTGCAAGATGAGTTGTTGGAGAAACTGTGGTTGCAATGGATTCCGCAAATATTATGGTAATGGAACTGGATGTATATTTTATTCATGGAATTCTACACAAGATGTTGATTTGGAGGATGACTTTAAATTTTACATATTGGGAAAGCCAACAAAGTCAGACCCAAATCACCACGGCAAAAGAAGATGGATATGGATAAGTGCAGCAATAGCAGTTGCGTTACTCATAATATGCTCACTCATTCTATGCATAGCAATAAAGAAACACAAATATGGATTTAAAGAGAAGAAAGTTAAAAGAAAGGAGAAAGAGATGCAAGAGTTGGCCGCTTCCAATGAATTATATAGTATCAAAGATCTTGAAGATGATTTCAAGGGACATGATATAAAAGTTTTTAGCTATGCATCAATTTTGGAAGCAACCATGGACTTTTCCCATGAAAACAAGTTAGGACAGGGAGGCTATGGACCTGTTTATAAGGGAATCTTGGCAACCGGGCAAGAAGTTGCTGTAAAAAGACTTTCAAAAACTTCTGGACAAGGAATTGTTGAATTCAAAAATGAATTGGTCTTGATATGTGAACTTCAACATACAAATCTTGTACAACTACTTGGTTGTTGTATTCATGAAGAAGAAAGGATTCTAATTTACGAATATATGCCAAACAAAAGCTTGGATTTCGATTTATTCGATTCTACAAAAAGGAAGTTACTCGATTGGAAGAAGCGCTTTAACATTATAGAAGGAATTGCTCAAGCATTACTCTATCTTCATAAGTATTCAAGATTAAAAATAATTCACAGAGACTTGAAAGCTAGCAACATACTTCTTGATGAGAATATGAATCCAAAAATTTCTGATTTTGGCATGGCAAGAATGTTCACCCAGCAAGAATCCACAATAAATACCAATAGGATTGTCGGGACATATGGATACATGTCCCCAGAATACGCTATGGAAGGAGTTTATTCTACAAAGTCTGATGTCTATAGCTTTGGAGTGTTGCTACTTGAAATTGTTTGTGGAAGAAAAAACAATAGCTTCTATGATGCTGATCGTCCACTAAATCTAATAGGACATGCATGGGAGCTATGGAATGATGGTGAGTATATGCAGTTAATGGATCCATCATTAAGTGACTCATTTGTTCCTGATGAAGTAAAAAGGTGCATTCATGTTGGTCTCTTATGTGTAGAGCAATACGCAAATGATCGACCTACAATGTCTGATGTTATATCAATGTTGACAAACAAACACGAACACATTACTTTACCGACAAGACCAGCATTCTATGTTAGAAAAGATATCTTTGAAGAGGAAACAACTTCTAAAGTTCTGGACACTGACACTTATTCTATAACTGGAAATTCCTCTTCGGGTGTAGAAAGGAAATAA	2523	0.3631	MVTTSFSLVTLSSVALRLHRQVYRTHKVNFIFIFETILMMIRFKIKKQVVLISYLCMWWTTSICVKAGNDSLKAGERLDANATLCSKQGRYCLLFQDTVNSQDNYNYLVIESKGYFGGRGSVIWMYDRNQPIDISSAVLSLNNSGVLKIEFQYKKEIIIYSSPQPINNTVATMLDTGNFVLEQLHPNGTKSVVWQSFDYPTDTLVPTMKLGVNRKTGHNWSLVSWLSHSVPTLGEFSLEWEPKEGELNIKKHGKVYWKSGKLGNSRLFDNIPANVQKNYQYVIISNKDEDSFSFEVKDQNYKMSPEWLLSSSGRLASSEGEIGNADNCYGFNSDRGCQKWEDIPTCRKPGEVFEIKIGRPNTHYAIFQDNVSYCYNDCKMSCWRNCGCNGFRKYYGNGTGCIFYSWNSTQDVDLEDDFKFYILGKPTKSDPNHHGKRRWIWISAAIAVALLIICSLILCIAIKKHKYGFKEKKVKRKEKEMQELAASNELYSIKDLEDDFKGHDIKVFSYASILEATMDFSHENKLGQGGYGPVYKGILATGQEVAVKRLSKTSGQGIVEFKNELVLICELQHTNLVQLLGCCIHEEERILIYEYMPNKSLDFDLFDSTKRKLLDWKKRFNIIEGIAQALLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARMFTQQESTINTNRIVGTYGYMSPEYAMEGVYSTKSDVYSFGVLLLEIVCGRKNNSFYDADRPLNLIGHAWELWNDGEYMQLMDPSLSDSFVPDEVKRCIHVGLLCVEQYANDRPTMSDVISMLTNKHEHITLPTRPAFYVRKDIFEEETTSKVLDTDTYSITGNSSSGVERK	840

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g06300	840	PIRSF	SRK	320	838	IPR024171	GO:0004674
	Vivi2g06300	840	PIRSF	SRK	41	321	IPR024171	GO:0004674
	Vivi2g06300	840	Coils	Coil	474	494	-	-
	Vivi2g06300	840	ProSiteProfiles	Protein kinase domain profile.	520	798	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g06300	840	SUPERFAMILY	Protein kinase-like (PK-like)	505	811	IPR011009	-
	Vivi2g06300	840	Gene3D	-	63	197	IPR036426	-
	Vivi2g06300	840	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	641	653	IPR008271	GO:0004672\|GO:0006468
	Vivi2g06300	840	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	596	799	-	-
	Vivi2g06300	840	ProSiteProfiles	Bulb-type lectin domain profile.	69	194	IPR001480	-
	Vivi2g06300	840	Pfam	D-mannose binding lectin	122	225	IPR001480	-
	Vivi2g06300	840	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	485	595	-	-
	Vivi2g06300	840	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	166	816	-	-
	Vivi2g06300	840	SUPERFAMILY	alpha-D-mannose-specific plant lectins	122	228	IPR036426	-
	Vivi2g06300	840	Gene3D	Transferase(Phosphotransferase) domain 1	596	803	-	-
	Vivi2g06300	840	Pfam	Protein tyrosine and serine/threonine kinase	522	790	IPR001245	GO:0004672\|GO:0006468
	Vivi2g06300	840	SMART	blect_4	69	200	IPR001480	-
	Vivi2g06300	840	SMART	serkin_6	520	798	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g06300	840	CDD	STKc_IRAK	526	793	-	-
	Vivi2g06300	840	Gene3D	Phosphorylase Kinase; domain 1	465	595	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g06300	Vivi-Chr2	198063896	198070558	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g06300	456	830	Receptor kinase-like Gene Family	AT3G45860	49.610	2.12e-121	380

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vivi2g06300		PK_Tyr_Ser-Thr	8.6e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g06300	-		-	vvo:131653519	1675.22