LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g06299	ATGGTCACAACGTCATTCTCCTTGGTAACACTCTCGTCGGTGGCTCTCCGGCTGCATCGACAAGTTTATAGGACACATAAGGTTAACTTTATCTTCATTTTTGAAACAATATTGATGATGATAAGGTTTAAAATAAAGAAACAAGTTGTATTGATATCCTACTTATGTATGTGGTGGACTACTAGTATTTGTGTTAAAGCAGGAAATGATAGTTTGAAGGCAGGGGAAAGATTGGATGCCAACGCCACTCTATGTTCTAAGCAAGGCAGGTATTGTCTGTTATTCCAAGACACAGTAAATAGCCAAGATAATTATAATTACTTGGTTATAGAAAGTAAGGGTTATTTTGGTGGTCGAGGATCAGTAATATGGATGTATGATAGAAACCAACCAATTGATATTAGTTCCGCGGTTTTATCTCTAAACAACTCTGGTGTGCTCAAAATTGAATTTCAATATAAGAAAGAAATAATCATTTACTCTTCACCTCAACCTATAAACAATACTGTGGCTACTATGCTAGACACAGGTAACTTTGTACTTGAACAACTTCACCCCAATGGTACAAAGAGTGTAGTGTGGCAGAGTTTTGATTATCCTACAGACACTTTGGTCCCAACAATGAAGTTAGGTGTTAACCGAAAAACTGGACATAATTGGTCATTAGTTTCTTGGTTGAGTCATTCGGTACCAACTTTGGGTGAGTTTAGTCTTGAATGGGAACCAAAAGAAGGTGAACTGAACATTAAAAAACACGGGAAAGTGTATTGGAAAAGCGGAAAACTTGGAAATAGTAGATTGTTCGACAATATTCCAGCAAATGTTCAAAAAAATTATCAATACGTTATTATCTCTAACAAGGATGAAGATTCTTTCAGTTTCGAAGTTAAAGACCAGAATTATAAGATGTCCCCAGAATGGTTGCTATCCTCTTCGGGGAGGCTCGCGAGTTCGGAAGGTGAGATTGGAAATGCAGATAATTGTTATGGATTTAATAGTGATAGAGGATGCCAAAAATGGGAGGATATACCAACTTGCAGGAAGCCTGGTGAGGTGTTTGAGATAAAGATAGGCAGACCCAACACTCACTATGCTATCTTCCAAGACAATGTGAGTTATTGTTACAATGATTGCAAGATGAGTTGTTGGAGAAACTGTGGTTGCAATGGATTCCGCAAATATTATGGTAATGGAACTGGATGTATATTTTATTCATGGAATTCTACACAAGATGTTGATTTGGAGGATGACTTTAAATTTTACATATTGGGAAAGCCAACAAAGTCAGACCCAAATCACCACGGCAAAAGAAGATGGATATGGATAAGTGCAGCAATAGCAGTTGCGTTACTCATAATATGCTCACTCATTCTATGCATAGCAATAAAGAAACACAAATATGGATTTAAAGAGAAGAAAGTTAAAAGAAAGGAGAAAGAGATGCAAGAGTTGGCCGCTTCCAATGAATTATATAGTATCAAAGATCTTGAAGATGATTTCAAGGGACATGATATAAAAGTTTTTAGCTATGCATCAATTTTGGAAGCAACCATGGACTTTTCCCATGAAAACAAGTTAGGACAGGGAGGCTATGGACCTGTTTATAAGGGAATCTTGGCAACCGGGCAAGAAGTTGCTGTAAAAAGACTTTCAAAAACTTCTGGACAAGGAATTGTTGAATTCAAAAATGAATTGGTCTTGATATGTGAACTTCAACATACAAATCTTGTACAACTACTTGGTTGTTGTATTCATGAAGAAGAAAGGATTCTAATTTACGAATATATGCCAAACAAAAGCTTGGATTTCGATTTATTCGATTCTACAAAAAGGAAGTTACTCGATTGGAAGAAGCGCTTTAACATTATAGAAGGAATTGCTCAAGCATTACTCTATCTTCATAAGTATTCAAGATTAAAAATAATTCACAGAGACTTGAAAGCTAGCAACATACTTCTTGATGAGAATATGAATCCAAAAATTTCTGATTTTGGCATGGCAAGAATGTTCACCCAGCAAGAATCCACAATAAATACCAATAGGATTGTCGGGACATATGGATACATGTCCCCAGAATACGCTATGGAAGGAGTTTATTCTACAAAGTCTGATGTCTATAGCTTTGGAGTGTTGCTACTTGAAATTGTTTGTGGAAGAAAAAACAATAGCTTCTATGATGCTGATCGTCCACTAAATCTAATAGGACATGCATGGGAGCTATGGAATGATGAGCAATACGCAAATGATCGACCTACAATGTCTGATGTTATATCAATGTTGACAAACAAACACGAACACATTACTTTACCGACAAGACCAGCATTCTATGTTAGAAAAGATATCTTTGAAGAGGAAACAACTTCTAAAGTTCTGGACACTGACACTTATTCTATAACTGGAAATTCCTCTTCGGGTGTAGAAAGGAAATAA	2430	0.363	MVTTSFSLVTLSSVALRLHRQVYRTHKVNFIFIFETILMMIRFKIKKQVVLISYLCMWWTTSICVKAGNDSLKAGERLDANATLCSKQGRYCLLFQDTVNSQDNYNYLVIESKGYFGGRGSVIWMYDRNQPIDISSAVLSLNNSGVLKIEFQYKKEIIIYSSPQPINNTVATMLDTGNFVLEQLHPNGTKSVVWQSFDYPTDTLVPTMKLGVNRKTGHNWSLVSWLSHSVPTLGEFSLEWEPKEGELNIKKHGKVYWKSGKLGNSRLFDNIPANVQKNYQYVIISNKDEDSFSFEVKDQNYKMSPEWLLSSSGRLASSEGEIGNADNCYGFNSDRGCQKWEDIPTCRKPGEVFEIKIGRPNTHYAIFQDNVSYCYNDCKMSCWRNCGCNGFRKYYGNGTGCIFYSWNSTQDVDLEDDFKFYILGKPTKSDPNHHGKRRWIWISAAIAVALLIICSLILCIAIKKHKYGFKEKKVKRKEKEMQELAASNELYSIKDLEDDFKGHDIKVFSYASILEATMDFSHENKLGQGGYGPVYKGILATGQEVAVKRLSKTSGQGIVEFKNELVLICELQHTNLVQLLGCCIHEEERILIYEYMPNKSLDFDLFDSTKRKLLDWKKRFNIIEGIAQALLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARMFTQQESTINTNRIVGTYGYMSPEYAMEGVYSTKSDVYSFGVLLLEIVCGRKNNSFYDADRPLNLIGHAWELWNDEQYANDRPTMSDVISMLTNKHEHITLPTRPAFYVRKDIFEEETTSKVLDTDTYSITGNSSSGVERK	809

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g06299	809	SMART	serkin_6	520	767	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g06299	809	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	485	595	-	-
	Vivi2g06299	809	Coils	Coil	474	494	-	-
	Vivi2g06299	809	Pfam	Protein tyrosine and serine/threonine kinase	522	721	IPR001245	GO:0004672\|GO:0006468
	Vivi2g06299	809	ProSiteProfiles	Protein kinase domain profile.	520	809	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g06299	809	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	641	653	IPR008271	GO:0004672\|GO:0006468
	Vivi2g06299	809	Gene3D	-	63	197	IPR036426	-
	Vivi2g06299	809	Gene3D	Phosphorylase Kinase; domain 1	463	595	-	-
	Vivi2g06299	809	PIRSF	SRK	744	807	IPR024171	GO:0004674
	Vivi2g06299	809	PIRSF	SRK	41	325	IPR024171	GO:0004674
	Vivi2g06299	809	PIRSF	SRK	321	747	IPR024171	GO:0004674
	Vivi2g06299	809	ProSiteProfiles	Bulb-type lectin domain profile.	69	194	IPR001480	-
	Vivi2g06299	809	SUPERFAMILY	alpha-D-mannose-specific plant lectins	122	228	IPR036426	-
	Vivi2g06299	809	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	596	748	-	-
	Vivi2g06299	809	SUPERFAMILY	Protein kinase-like (PK-like)	505	782	IPR011009	-
	Vivi2g06299	809	SMART	blect_4	69	200	IPR001480	-
	Vivi2g06299	809	Gene3D	Transferase(Phosphotransferase) domain 1	596	772	-	-
	Vivi2g06299	809	Pfam	D-mannose binding lectin	122	225	IPR001480	-
	Vivi2g06299	809	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	168	745	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g06299	Vivi-Chr2	198063885	198070558	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g06299	475	785	Receptor kinase-like Gene Family	AT4G11530	49.563	1.15e-101	327

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vivi2g06299		PK_Tyr_Ser-Thr	6.7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g06299	-		-	vvo:131653519	1595.1