Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06290 ATGTTCATTGAAAAACTTTCTAAGTTGATATGTTTTTGTTCAATCATTACATTTACACTATGTTATGCTGCAACAAACCCTAATGATTTCAAAGTTTTGAATGATTTTAGAAAAGGATTAGAGAATCCAGAGCTTTTGAAATGGCCAGAGAAAGGAAATAATGATCCATGTGGTCCTCCTTCATGGCCTTATGTCTTCTGTTCTGAAGATAGAGTCACTCAGATTCAAGCTAAGAATCTTGGTCTTAGAGGAACATTGCCTCAAAGCTTTAACCAACTCACAGAACTCTACAATTTAGGTCTTCAACGCAACAATCTCACCGGGATTTTACCGAGTTTTAGTGGCTTGTCAAAACTGGAATTCGCTTTCTTGGATTACAATTCATTTGATGCTATTCCATTTGATTTCTTCAATGGATTGACAAGCCTCAGGGTTTTGTCTTTGGAAGAAAATCAACTCAATGTGAGTACTAATGGTTGGCTATTTCCTTCGGATTTGGAAAAATCGGTTCAGTTAACTAATCTTTCTTTGGTTCATTGTAATCTGGTTGGATCTTTGCCTGATTTTCTAGGCACATTGCCATCTCTCACAAATCTTAGGCTTTCAAACAACAAACTTTCGGGTACGATTCCAGCTACTTTTTCTCAATCTTCAATTCAGGTTCTGTGGTTGAATAATCAAGAACGAGAAGGCGGTTTTACAGGTTCTATTGATGTTATTGCTTCGATGGTTTTCTTAACGCAGATTTGGCTGCACGGAAACAAGTTTTCAGGTACGATTCCGAAGAACATTGGAAATCTCACTGCCTTGAAGGAACTCAACCTTAACAGTAATCAGTTTGTTGGGTTGATTCCGCAATCTTTAGCAGAAATGAACCTCGAGTTACTTGTTTTGAACAATAACATGCTAATGGGTCCAATACCGAAGTTTAAAGCTGCAAACTTTACTTATGATGATAATCTCTTTTGCCAAACTGAGCCTGGACTAGAATGTTCTCAACAAGTTACATCACTGTTGGATTTTCTGGATAATCTGAATTATCCATCGTTTCTAATTTCCGATTGGTCGGGTAATAAACCGTGCACAAGTAGCACAGGACCATGGTTTGGATTGAGCTGCAATTCCTCTGAGGTATCTTTAATTAATCTACCAAGACATAAGCTTAATGGTAGTTTAAGTCCTTCACTTGCTAAGTTAGAATCACTTCTCGAAATTAGGCTTGCTGGAAATAATATATCTGGCGTAGTTCCCAGCGAGTTTACTCAATTGAAATCCTTGAGATTGTTGGATTTGAGTGACAATAATATTGAATCTCCTTTGCCGATTTTTCGTGATGGTGTGAAGGTTATTACGGACGGTAACCCTTTTCTTTATAATCAAACTGGAGGGAGTGTTCGTCCTGTTAATAGCAGCCCGAGTTATGAAAACAACCATACTCGCTCTCCGTCTTCATATAATCAGCTAGTTCCAAGCTCACATCACAGAATATTCAAGACAGTAGCAACATTGGTTGGAGTTGCAGTGTTTGCAGTTGTAGTTTGTTTTATTGTTTATCTCTTTTTATGTTTCTTTAAGAAGGATAAAAACTCATTGGATGCTCCGAGTTCCATTGTGGTTCACCCTCGAGATTCATCTGATCCATACAATGGAGTTAAAATTACGGTTTCAAGCAATAACACTGGAAGCTTAACAGAAAAATCCGGGACAAGTTCTCTGACTAACTTAAGTGGCGAAACTAAAAACTCTCACTTAATTGAGGTTGGAAACCAGGTCATATCGGTGCAAGTGCTACGCAAGGTTACTAACGATTTTGCATCGGAAAATGAGCTAGGCCGTGGTGGATTTGGAACAGTTTACAAAGGGGAATTAGAAGATGGAACCAAGATAGCAGTAAAGAGAATGGAGAATGGAACTATCGGAAATAAGGCAGTGGAAGAGTTTCAAGCTGAAATAGATGTTCTTTCTAAGGTTCGTCATCGACATTTGGTATCTCTTTTGGGGCATTCCATTGAAGGAAATGAAAGACTTTTAGTTTATGAATATATGCCGCTTGGTGCTCTTAGTCAGCATCTTTTTCATTGGAAAAAATTGGACTTAAAGCCTTTGTCTTGGTCACAAAGGCTTGTAATAGCACTAGATGTTGCTAGAGCGATGGAATATCTTCACGGCCTTACTCGCGAAACCTTTATTCACAGAGATCTCAAGTCTTCTAATATTCTACTCGGTGACGATTTTCGTGCAAAAGTTTCGGATTTTGGTCTCGTGAAGCTTGCCCCAAATGGTGAAAAATCTGTAGTAACAAAACTTGCTGGGACTTTTGGTTACTTAGCCCCGGAATATGCAGTGATGGGAAAAATCACCACAAAAGTTGATGTATTCAGCTATGGTGTCGTGTTAATGGAACTTCTAACCGGGCTAACGGCCCTTGATGAGAGCCGGTCAGAGGAAATCCGATACTTGGCAGAATGGTTTTGGCGAGTTAAATCAAACAATGAAAAGCTTATGGCTGCTATTGATCCAGCTTTGGAACAAGTCGAAGAAACATGTGAAAGCATAACTATTGTAGCAGAACTTGCTGGACATTGCACTGCTAGGGAAGCATACCATAGGCCAGATATGAGTCATGCTGTCAACGTACTATCAGCCTTAGTGGAGAAATGGCGACCGGTTTCCAATGAATTCGACGATTCCTATTCTGGCGTTGACGACACTCGACCACTTCCTCAAATGTTGAAAATTTGGAAGGATGCAGAAAACAGTGAGTTTAGTTATAGTAGTACTTCTGCTAGTCTTGAAGACAGTAAAGGAAGTATTGCAGTGAGGCCTACTGGATTTGCTGACTCTTTCACTTCTGCAGATGCTAGATGA 2868 0.3933 MFIEKLSKLICFCSIITFTLCYAATNPNDFKVLNDFRKGLENPELLKWPEKGNNDPCGPPSWPYVFCSEDRVTQIQAKNLGLRGTLPQSFNQLTELYNLGLQRNNLTGILPSFSGLSKLEFAFLDYNSFDAIPFDFFNGLTSLRVLSLEENQLNVSTNGWLFPSDLEKSVQLTNLSLVHCNLVGSLPDFLGTLPSLTNLRLSNNKLSGTIPATFSQSSIQVLWLNNQEREGGFTGSIDVIASMVFLTQIWLHGNKFSGTIPKNIGNLTALKELNLNSNQFVGLIPQSLAEMNLELLVLNNNMLMGPIPKFKAANFTYDDNLFCQTEPGLECSQQVTSLLDFLDNLNYPSFLISDWSGNKPCTSSTGPWFGLSCNSSEVSLINLPRHKLNGSLSPSLAKLESLLEIRLAGNNISGVVPSEFTQLKSLRLLDLSDNNIESPLPIFRDGVKVITDGNPFLYNQTGGSVRPVNSSPSYENNHTRSPSSYNQLVPSSHHRIFKTVATLVGVAVFAVVVCFIVYLFLCFFKKDKNSLDAPSSIVVHPRDSSDPYNGVKITVSSNNTGSLTEKSGTSSLTNLSGETKNSHLIEVGNQVISVQVLRKVTNDFASENELGRGGFGTVYKGELEDGTKIAVKRMENGTIGNKAVEEFQAEIDVLSKVRHRHLVSLLGHSIEGNERLLVYEYMPLGALSQHLFHWKKLDLKPLSWSQRLVIALDVARAMEYLHGLTRETFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPNGEKSVVTKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLTALDESRSEEIRYLAEWFWRVKSNNEKLMAAIDPALEQVEETCESITIVAELAGHCTAREAYHRPDMSHAVNVLSALVEKWRPVSNEFDDSYSGVDDTRPLPQMLKIWKDAENSEFSYSSTSASLEDSKGSIAVRPTGFADSFTSADAR 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06290 955 FunFam receptor protein kinase TMK1 566 681 - -
Vivi2g06290 955 MobiDBLite consensus disorder prediction 461 486 - -
Vivi2g06290 955 ProSiteProfiles Protein kinase domain profile. 604 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06290 955 Gene3D Ribonuclease Inhibitor 27 328 IPR032675 -
Vivi2g06290 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Vivi2g06290 955 SUPERFAMILY Protein kinase-like (PK-like) 583 880 IPR011009 -
Vivi2g06290 955 Pfam Leucine rich repeat N-terminal domain 332 374 IPR013210 -
Vivi2g06290 955 Pfam Leucine rich repeat N-terminal domain 27 68 IPR013210 -
Vivi2g06290 955 SMART serkin_6 604 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06290 955 SMART LRR_typ_2 93 115 IPR003591 -
Vivi2g06290 955 SMART LRR_typ_2 423 445 IPR003591 -
Vivi2g06290 955 SMART LRR_typ_2 399 422 IPR003591 -
Vivi2g06290 955 SMART LRR_typ_2 193 216 IPR003591 -
Vivi2g06290 955 SMART LRR_typ_2 116 139 IPR003591 -
Vivi2g06290 955 SMART LRR_typ_2 267 290 IPR003591 -
Vivi2g06290 955 SMART LRR_typ_2 140 163 IPR003591 -
Vivi2g06290 955 FunFam Leucine-rich repeat receptor-like kinase 333 460 - -
Vivi2g06290 955 Gene3D Ribonuclease Inhibitor 333 460 IPR032675 -
Vivi2g06290 955 CDD STKc_IRAK 610 880 - -
Vivi2g06290 955 FunFam Receptor-like kinase TMK4 27 328 - -
Vivi2g06290 955 Gene3D Phosphorylase Kinase; domain 1 566 681 - -
Vivi2g06290 955 Gene3D Transferase(Phosphotransferase) domain 1 682 903 - -
Vivi2g06290 955 SUPERFAMILY L domain-like 51 443 - -
Vivi2g06290 955 Pfam Protein tyrosine and serine/threonine kinase 607 879 IPR001245 GO:0004672|GO:0006468
Vivi2g06290 955 FunFam receptor protein kinase TMK1 682 899 - -
Vivi2g06290 955 PANTHER OSJNBA0070M12.3 PROTEIN 10 955 - -
Vivi2g06290 955 ProSitePatterns Protein kinases ATP-binding region signature. 610 632 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06290 Vivi-Chr2 197905367 197908949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06290 84 873 Receptor kinase-like Gene Family AT1G55610 29.392 5.84e-77 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vivi2g06290 PK_Tyr_Ser-Thr 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06290 K00924 - gmx:100785090 1399.03