Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06283 ATGGGAGAAATTGAAATTCCTCAATTTTTCATTTGTCCCATTTCACTTCAAATCATGAAGGAACCAGTGACAACACTCACAGGAATAACATACAACAGAGAAAGCATCGAACACTGGTTACTCACATCAAAAAACTGCACATGTCCAATTACCAAACAGCCCTTACCAAGAAGCTCAGAGTTCTTGACACCAAACCACACTCTTCAGAGATTAATCCAATCATGGCACTCAACAAATTCACCATCCTCAAGAATCTCTATAGAGAAATCCAAACTTGAAAAACTTGTGAAGAATCTTGATCATGAAGCAATACAGAAACTACACACTCTTGCTTTAGAAGATGAAGGAACCAAAACATGCTTGGTTGAAGCAGGAGTAGCAAAAGCGATTATTCAAAAAGTGATTATAAAGAGCTTTTTCAAGCAAGGTAAAACAATATATCTTGAACAAGCTTTGAGAATTCTACGTTTACTTTGGCCTTTAGCCATAACCAATGACAAGAACATGAACTGTTACAAAGTTGATCACAACTTTGACTTAGTCAACTCTTTGACTTTGACTTTGCAACTTCACAATCATAAAAAAAACTTCAAGGTAATAAACGAAGCAATGCTTGTGCTGAAACATGTTCTTGAGGTAAAAAGTTCAAACTCTTTGTTGAATCTAAACGTCGAATTCTTCAGAGAAATAGTGAAAGTACTTAGAATCAGAAACAAAGAACTTTCCAAACAAGCTATAAAATCTGCATTGCATGTGTTACTACAAACATGTCCATTAGGTAGAAACCGAATGAAGATAGTGGAAGCTAAAGCAGTGACAGAACTCATTGATCTTGCACTTGAGAAGCAAGAAAAGAATCAAACCGAGCTTATATTCACGCTTCTGGCGGATTTGTGTTCGTGTGCTGATGGAAGAGAGCAGTTTGTGAGACATGCAGCAGGGATAGCAGTGGTTTCTAAGAGAACATTGAGGGTTTCAGCAACAACTGATGATAGGGCTCTTCAGATATTTTGTTTGATTTCGAAGTATTGTGGAACACATGAGTTTGTTCAAGAGATGTTGAGGGTTGGTGCTGTTTCGAAACTTTGTATGGTTATGCAGGCGGATTGTGCTTCTTATTTGAAGGAAAAAGCTAGAGGTGTTCTTAGGTTGCATTCAAATGTGTGGAATGATTCTCCTTGTATTCAGGTTTATTTGTTCACTAGACACCAAAGGTGA 1218 0.3727 MGEIEIPQFFICPISLQIMKEPVTTLTGITYNRESIEHWLLTSKNCTCPITKQPLPRSSEFLTPNHTLQRLIQSWHSTNSPSSRISIEKSKLEKLVKNLDHEAIQKLHTLALEDEGTKTCLVEAGVAKAIIQKVIIKSFFKQGKTIYLEQALRILRLLWPLAITNDKNMNCYKVDHNFDLVNSLTLTLQLHNHKKNFKVINEAMLVLKHVLEVKSSNSLLNLNVEFFREIVKVLRIRNKELSKQAIKSALHVLLQTCPLGRNRMKIVEAKAVTELIDLALEKQEKNQTELIFTLLADLCSCADGREQFVRHAAGIAVVSKRTLRVSATTDDRALQIFCLISKYCGTHEFVQEMLRVGAVSKLCMVMQADCASYLKEKARGVLRLHSNVWNDSPCIQVYLFTRHQR 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06283 405 SUPERFAMILY RING/U-box 4 80 - -
Vivi2g06283 405 PANTHER WDSAM1 PROTEIN 3 396 IPR045185 GO:0061630
Vivi2g06283 405 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Vivi2g06283 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 91 IPR013083 -
Vivi2g06283 405 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Vivi2g06283 405 Gene3D - 92 392 IPR011989 -
Vivi2g06283 405 CDD RING-Ubox_PUB 7 58 IPR045210 -
Vivi2g06283 405 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Vivi2g06283 405 SUPERFAMILY ARM repeat 101 383 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06283 Vivi-Chr2 197792266 197793611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06283 3 395 U-box Gene Family AT2G35930 39.609 1.52e-91 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06283 - - gmx:100787419 501.901