Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06282 ATGGGAGAAATTGAAATTCCTCAATTTTTCATTTGTCCCATTTCACTTCAAATCATGAAGGAACCAGTGACAACACTCACAGGAATAACATACAACAGAGAAAGCATCGAACACTGGTTACTCACATCAAAAAACTGCACATGTCCAATTACCAAACAGCCCTTACCAAGAAGCTCAGAGTTCTTGACACCAAACCACACTCTTCAGAGATTAATCCAATCATGGCACTCAACAAATTCACCATCCTCAAGAATCTCTATAGAGAAATCCAAACTTGAAAAACTTGTGAAGAATCTTGATCATGAAGCAATACAGAAACTACACACTCTTGCTTTAGAAGATGAAGGAACCAAAACATGCTTGGTTGAAGCAGGAGTAGCAAAAGCGATTATTCAAAAAGTGATTATAAAGAGCTTTTTCAAGCAAGGTAGAAACCGAATGAAGATAGTGGAAGCTAAAGCAGTGACAGAACTCATTGATCTTGCACTTGAGAAGCAAGAAAAGAATCAAACCGAGCTTATATTCACGCTTCTGGCGGATTTGTGTTCGTGTGCTGATGGAAGAGAGCAGTTTGTGAGACATGCAGCAGGGATAGCAGTGGTTTCTAAGAGAACATTGAGGGTTTCAGCAACAACTGATGATAGGGCTCTTCAGATATTTTGTTTGATTTCGAAGTATTGTGGAACACATGAGTTTGTTCAAGAGATGTTGAGGGTTGGTGCTGTTTCGAAACTTTGTATGGTTATGCAGGCGGATTGTGCTTCTTATTTGAAGGAAAAAGCTAGAGGTGTTCTTAGGTTGCATTCAAATGTGTGGAATGATTCTCCTTGTATTCAGGTTTATTTGTTCACTAGACACCAAAGGTGA 867 0.391 MGEIEIPQFFICPISLQIMKEPVTTLTGITYNRESIEHWLLTSKNCTCPITKQPLPRSSEFLTPNHTLQRLIQSWHSTNSPSSRISIEKSKLEKLVKNLDHEAIQKLHTLALEDEGTKTCLVEAGVAKAIIQKVIIKSFFKQGRNRMKIVEAKAVTELIDLALEKQEKNQTELIFTLLADLCSCADGREQFVRHAAGIAVVSKRTLRVSATTDDRALQIFCLISKYCGTHEFVQEMLRVGAVSKLCMVMQADCASYLKEKARGVLRLHSNVWNDSPCIQVYLFTRHQR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06282 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 84 IPR013083 -
Vivi2g06282 288 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Vivi2g06282 288 Gene3D - 89 280 IPR011989 -
Vivi2g06282 288 SUPERFAMILY RING/U-box 4 80 - -
Vivi2g06282 288 SUPERFAMILY ARM repeat 88 266 IPR016024 -
Vivi2g06282 288 CDD RING-Ubox_PUB 7 58 IPR045210 -
Vivi2g06282 288 PANTHER WDSAM1 PROTEIN 141 279 IPR045185 GO:0061630
Vivi2g06282 288 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Vivi2g06282 288 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06282 Vivi-Chr2 197792266 197793611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06282 143 286 U-box Gene Family AT3G52450 41.497 6.14e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06282 - - gmx:100778547 234.958