Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06281 ATGGATGAAACTGAAATCGACCTCCCTTCCCATTTTCTCTGCCCCATTTCCCTCCAACTCATGAAAGATCCTGTCACTCTTTCAACAGGAATAACCTACGACAGAGACAACATAGAAAAATGGTTATTTTCATTCCAAAACAAAACATGTCCTGTCACAAAACAAACCTTATTACAAACCGATCTTAATAACCTTACTCCAAACCACACTCTTGGCCGTTTGATTCAATCTTGGTGCACTCTCAATGCTTCATCTGGTGTTGAACGCATTCCAACGCCAAAATCACCAGTTGATAGAACACAGATCCTTAAACTCCTCAATGAAGCAAAGAAATTTCCAGAAACACAACTTACCTGTCTCGTGAAGCTTCGTTCTATCGTCGTCGAAAGCGAACGGAACAAAAAATGCTTGGAATCTGCAGGTGCAGTAGAGTTCTTAGCTTCAACCATGAAGAACAATTCAAGTTCAAGTTCTCTGAGTGAAGCTGCTATTGAAGTTTTGTTTCATATAAACCCTTCTGAAGATCATATTAAGAATCTGATAAACAATGAGAGTATTCAATTTATTGAGTCATTGTTTCATGTGATGAAGCTTGGAAGCTGTCAATCTAGAGGCTATGCAACAATGCTATTGAAATCGGCTTTTGAAGTATGCGATCCGATTCAATTAATCGGCGTAAAAAAGGCGATATTCGAAGAGGTGATAAGAGTGCTAACTGATAAGATTTCACAACAGGCTACAAAAGCTGCATTGAAGTTACTTGTGGAGCTTTTACCATGGGGAAGAAACCGAATAAAAGCGGTCGAAGGCGGCGCGGTTTTAGTCCTTATCGAGCTTCTTTTCGATGCGTCCGAAAGGAGAGTTTGTGAGTTGATTTTAATAGGTTTGGATCAACTTTGTGGTTGTGCAGAAGGGCGTGCGGAGTTGTTGAATCATGGAGCAGGAATTGCTATTGTGTCAAAGAAGATTTTGAGGGTTTCTCATGTTGTGAGTGATAGAGGTGTTAGAATTTTGAGTTCTATCTGTAGGTATTCTGCAAATTCTAGAGTTTTGAATGAAATGTTGCAAGTTGGAGGTGTTTCAAAGCTGTGTTTGGTGCTTCAAGTTGATAGTAATTTTAAGACTAAAGAGAAGGCTAAGGAGATTCTCAAATTGCATTCTGGAGTTTGGAAGAATTCTACTTGTATTCCTGTTCCTTTGTTATCATCTTATCCATGA 1218 0.3916 MDETEIDLPSHFLCPISLQLMKDPVTLSTGITYDRDNIEKWLFSFQNKTCPVTKQTLLQTDLNNLTPNHTLGRLIQSWCTLNASSGVERIPTPKSPVDRTQILKLLNEAKKFPETQLTCLVKLRSIVVESERNKKCLESAGAVEFLASTMKNNSSSSSLSEAAIEVLFHINPSEDHIKNLINNESIQFIESLFHVMKLGSCQSRGYATMLLKSAFEVCDPIQLIGVKKAIFEEVIRVLTDKISQQATKAALKLLVELLPWGRNRIKAVEGGAVLVLIELLFDASERRVCELILIGLDQLCGCAEGRAELLNHGAGIAIVSKKILRVSHVVSDRGVRILSSICRYSANSRVLNEMLQVGGVSKLCLVLQVDSNFKTKEKAKEILKLHSGVWKNSTCIPVPLLSSYP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06281 405 SUPERFAMILY ARM repeat 102 384 IPR016024 -
Vivi2g06281 405 ProSiteProfiles U-box domain profile. 7 85 IPR003613 GO:0004842|GO:0016567
Vivi2g06281 405 CDD RING-Ubox_PUB 9 62 IPR045210 -
Vivi2g06281 405 Gene3D - 99 391 IPR011989 -
Vivi2g06281 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Vivi2g06281 405 PANTHER WDSAM1 PROTEIN 5 397 IPR045185 GO:0061630
Vivi2g06281 405 SUPERFAMILY RING/U-box 2 82 - -
Vivi2g06281 405 SMART Ubox_2 11 78 IPR003613 GO:0004842|GO:0016567
Vivi2g06281 405 Pfam U-box domain 9 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06281 Vivi-Chr2 197776571 197778092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06281 1 405 U-box Gene Family AT2G35930 55.501 2.50e-157 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06281 - - gmx:100778012 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06281 2 197776571 197778092 Vivi2g06281 2 197776571 197778092 ECH