Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06268 ATGGATCCCTTGATCCGCAAGCTCCGGCGCCTCCTTCTCCGATGGCTTCACCGATCTCGTTCTGGATCCGTGTTTTTTGTGAGGAGAATTTCGTATAAGGAAGTTAGAAAAGCGACCGATAGTTTTCAAAGAATAGTTTATAGCAATTCCGAAGTTTCTGCATATGCAGCGAATTTCGGAGAGGGGTGCGGCGGTGTTTGTTTGGTGAAAGAAGTTAAGGATTTTGATAGAGGAAATGATGAGAGTTTTCATAAACAAGTGCAGTTGTTGGGACGGTTGCATCATCGGCACCTTCTTTCGCTAAAAGGCTTTTCGTTGGGACACGATCGAAAGAGCAAGAGATTGCTTGTATTTGACAACATAGAAAATGGAAGCTTAAAGGAGCATCTCAATGATCCCTTGAAGACTCCTTTAAATTGGAGGACGAGGTTGCAGATAGCTAATGGCGTTGTGGCTGCACTGGAATACTTGTTTCTTTTCAGTGAACCGCCAATAAGTCATGTCTCTATTAGCTCTAGCAATATTATGTTAGATGAGAACTTCACCCCTAAACTATCTGATTTTGGCCTTCTTACTGGTGGAAGTTCTGTCATGGTGACAGAAGATTGCACGGGACAGGAAAACCGTAAGATTATATTCCAACTTGGAGTGCTCATCCTGGAACTTGTCACTGGTCAGTCTTCAGAGATGGAAGGTTCTGATTTAATTGAATGGATTCAAGAATCCCGATTTTTCAGTTCCATAGATAAGATGTTAGACCCTGATCTTGGAAACAATTATGATGGTACAGAACTTAAAAGTCTTCTAGCTGTGGCAAAATTATGTATCAAATCATGGGACAAGCCTTCATATACAATTCCTCAGTTATTTCGATATCTCCAAAAGGAGACTGATATTCCCCAACATTAG 909 0.4136 MDPLIRKLRRLLLRWLHRSRSGSVFFVRRISYKEVRKATDSFQRIVYSNSEVSAYAANFGEGCGGVCLVKEVKDFDRGNDESFHKQVQLLGRLHHRHLLSLKGFSLGHDRKSKRLLVFDNIENGSLKEHLNDPLKTPLNWRTRLQIANGVVAALEYLFLFSEPPISHVSISSSNIMLDENFTPKLSDFGLLTGGSSVMVTEDCTGQENRKIIFQLGVLILELVTGQSSEMEGSDLIEWIQESRFFSSIDKMLDPDLGNNYDGTELKSLLAVAKLCIKSWDKPSYTIPQLFRYLQKETDIPQH 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06268 302 PANTHER OS01G0253100 PROTEIN 27 296 - -
Vivi2g06268 302 FunFam Protein kinase superfamily protein 16 119 - -
Vivi2g06268 302 Gene3D Transferase(Phosphotransferase) domain 1 212 302 - -
Vivi2g06268 302 Gene3D Transferase(Phosphotransferase) domain 1 121 210 - -
Vivi2g06268 302 FunFam probable receptor-like protein kinase At1g49730 212 301 - -
Vivi2g06268 302 SUPERFAMILY Protein kinase-like (PK-like) 25 234 IPR011009 -
Vivi2g06268 302 ProSiteProfiles Protein kinase domain profile. 10 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06268 302 Pfam Protein tyrosine and serine/threonine kinase 67 192 IPR001245 GO:0004672|GO:0006468
Vivi2g06268 302 Gene3D Phosphorylase Kinase; domain 1 17 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06268 Vivi-Chr2 197493637 197495692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06268 22 302 Receptor kinase-like Gene Family AT3G19300 36.688 3.89e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Vivi2g06268 PK_Tyr_Ser-Thr 7.5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06268 - - vvo:131647859 560.066