Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06256 ATGATTGAAAAAACCTCGGAAAGATTGGTCGAAGCTGCAAATCATCTAGGAGTTGGTAAAGATGTGTTTGATGATTCAAGAAACATCATGAATGAGTTGAAGAAAATGGAGCTAACAGAACAAGAGCGTTTTGTTGCCGCTGACAAAATATTATCTGTGCCACATCGACTAATTGTGAGTAGTTATGCGGAAGAAAGTGATTTCGAGGAAGAAGAAAGTGATTTTGAACAAGAAAATGCTGGAGATGGAGAATCAAGTGGTATTGTTGTTGATGAAGTAATAGAGAACAAAGATAACAATGAACCACCAATGGTTCAGGTTCTGCATCAGCCACTTCCCATTGATTTAATAGGAAATACAATGAAGGTAGATGGAAGGAAGTCAAGGAAAAAGAAAAACGTAGCGTTAACATGGCAAGTGATGGAACACGAGCTACAGTTATTTGTTAATTGGGTGTTTCCAACAGATAGGGAAAGACGTGAGATTGAAATGTTGAATAAAACTGCAGAGGCGTCCTCTGATTTCATTATACCTTTGTTTAAATTCCAAAAGGAATGGTTAGCATGGGCTTTGGATCAGGAAAACAATTTCAGAGGCGGAGTGCTTGCAGACGAAACGGGAATGGGAAAGACCATTCAAGCAATTGCCCTTGTCCTTGCCAAACGCGAACCCCAATGTTTACCATCTTCTTCTGTAGTGTTGCCTTTGGTCAGAGGAACTCTTGTCATTTGTCCTGTGGTTGCCGTCACTCAGTGGGCCGATGAGATTGAGTGGTGTACTTTGAAAGAAAGCACCAATGTTCTAGTTTATCACGGGGCTGACAAAACTAAGAACTGGAAACCATTTTCCGAGTATGATTTTGTGATAACTTCATACTCTATAGTTGAATCTAATTGGCATGAGAGAAATTGTGAAGGACCTAGTGTTGTTAGACAAGAAAAACCATCCAAGCAAGTTAAGGAAAATAAAACAAATGCTATGCCATCCCTTTATGCTGTAAAGTGGCAGCGGATCATACTGGATGAGGCCCACTATATGAAAGATAAACGTTCTAATACCACTCAAGCAGTTTTTGCTTTAGAATCTACCTACAAATGGGCATTAAGTGGCACTCTATTTCCGAGCCGTCAGGGAGAGTTGTATCATGTGATAAGGTTCCTACAGATAGATCCTTATTCCTATTACTTTTGCGAACACTGTAATTGTAAAGTTCTTCATCACAGGTCTGGATTATGTTCAGACTGCTCCCATAGCTCTGGGGATCATTTCAATTGGTGGAACAAATACATTGCTAAACCAATTGAATCTTCTCCGTCCAATGATGTTTGTGCAAAAAACGCTATGATATTGCTCAAACACAAAATTTTGAAAGACTTGGTACTTAGACGCACAAAAATAGGCAGGGCTGCTGATCTTGAACTTCCACCTACAACTGTTTCAGTGAGAAGGGATTTCCTGGATAGAGAAGAGTTGAACTATTATGAAACATTTTACAAGGAAGTCGAAGCAAAACTTAATAGATATGTTGGAGAAAATGCTATAAGGCTTCGCCGTAGGGAAATCCTTGCCCTCATCGTACAGCTGTATAAGGTGACAGATCATCGATACCTTGTGGATTTTTCTCAAAGTGAGGAGTTAAGTGCTGAAAATCTAGCATGTAATGCCGCTGACAAACAAGAAAGTAGCATTTGTCATGAGCCACAAGAAGATCCTGTTGATTTAACTTCCAACGAGGATATTAGGGGTCAGGATGATAAAACCATGATTAAATATTTCAGATCCTTGAGAATTTTAAGAAAAATTGGCCTCGAGAATTTTCAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGATTGAAAGAGATGGCTCTGCAAAAGGGATTGTTTTTGGCAAATTCTCACCATTCTTAGATCTTATATACTATTCTTTGTACAAGTCTGGAGTATCTTGCGTTATGTTGAATGGAAGCATGTCACAGGCCGCACAGGATGATGTTGTTAAAAGATTTAATGTTGAACCAGACTGCAGAATTTTGCTCATGACCTTTATGGCTAGTGGTATTCCACTCAGTTTGACAGTAGCGTCACATGTTTTCATTATGAACTCTTGTTGTAGTCCAGCTTTTGAGCTTCAGGCTCTAGGCAGAATTCAACGAATTGGGCAATATAAACCTACAAGAGTTGTGAAGTTTGTCATTGCAAACACAGTTGAGGAGGAGATTTTGAACATATTGGAGAGGAGGAAATTAATTGCTCAAGGGATTTTAAACGGTTCTTCTGAAGCTATGGAGGAGCAATTGTCAATTGGGAAGTTGAACATCAAATGGATTGCGGATTACATAATCCAGGTTGAATAA 2370 0.3903 MIEKTSERLVEAANHLGVGKDVFDDSRNIMNELKKMELTEQERFVAADKILSVPHRLIVSSYAEESDFEEEESDFEQENAGDGESSGIVVDEVIENKDNNEPPMVQVLHQPLPIDLIGNTMKVDGRKSRKKKNVALTWQVMEHELQLFVNWVFPTDRERREIEMLNKTAEASSDFIIPLFKFQKEWLAWALDQENNFRGGVLADETGMGKTIQAIALVLAKREPQCLPSSSVVLPLVRGTLVICPVVAVTQWADEIEWCTLKESTNVLVYHGADKTKNWKPFSEYDFVITSYSIVESNWHERNCEGPSVVRQEKPSKQVKENKTNAMPSLYAVKWQRIILDEAHYMKDKRSNTTQAVFALESTYKWALSGTLFPSRQGELYHVIRFLQIDPYSYYFCEHCNCKVLHHRSGLCSDCSHSSGDHFNWWNKYIAKPIESSPSNDVCAKNAMILLKHKILKDLVLRRTKIGRAADLELPPTTVSVRRDFLDREELNYYETFYKEVEAKLNRYVGENAIRLRRREILALIVQLYKVTDHRYLVDFSQSEELSAENLACNAADKQESSICHEPQEDPVDLTSNEDIRGQDDKTMIKYFRSLRILRKIGLENFQTSTKIEALREEIRFMIERDGSAKGIVFGKFSPFLDLIYYSLYKSGVSCVMLNGSMSQAAQDDVVKRFNVEPDCRILLMTFMASGIPLSLTVASHVFIMNSCCSPAFELQALGRIQRIGQYKPTRVVKFVIANTVEEEILNILERRKLIAQGILNGSSEAMEEQLSIGKLNIKWIADYIIQVE 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06256 789 MobiDBLite consensus disorder prediction 560 579 - -
Vivi2g06256 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 768 IPR027417 -
Vivi2g06256 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 463 IPR027417 -
Vivi2g06256 789 Gene3D - 475 783 IPR027417 -
Vivi2g06256 789 MobiDBLite consensus disorder prediction 64 79 - -
Vivi2g06256 789 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 390 IPR014001 -
Vivi2g06256 789 CDD SF2_C_SNF 609 736 - -
Vivi2g06256 789 SMART ultradead3 175 396 IPR014001 -
Vivi2g06256 789 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 90 762 - -
Vivi2g06256 789 CDD DEXDc_SHPRH-like 179 463 - -
Vivi2g06256 789 SMART helicmild6 642 725 IPR001650 -
Vivi2g06256 789 MobiDBLite consensus disorder prediction 64 86 - -
Vivi2g06256 789 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 607 782 IPR001650 -
Vivi2g06256 789 MobiDBLite consensus disorder prediction 562 579 - -
Vivi2g06256 789 Pfam SNF2-related domain 192 537 IPR000330 GO:0005524|GO:0140658
Vivi2g06256 789 Pfam Helicase conserved C-terminal domain 613 725 IPR001650 -
Vivi2g06256 789 Gene3D - 181 402 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06256 Vivi-Chr2 197176751 197182585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06256 62 777 RAD5 or RAD16-like Gene Family AT1G05120 43.118 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g06256 SNF2_N 8.7e-39 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06256 K15083 - gmx:100786366 662.529