Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06255 ATGGAGCTTCGTCGTAGCCAACGCATTTCCAACGCAAGATCTTCTGGACTAATTGTGAGTAGTTATGCGGAAGAAAGTGATTTCGAGGAAGAAGAAAGTGATTTTGAACAAGAAAATGCTGGAGATGGAGAATCAAGTGGTATTGTTGTTGATCAAGTAATAGAGAACAAAGATAACAATGAACCACCAATGGTTCAGGTTCTGCATCAGCCACTTCCCATTGAAGATGGAAGGAAGTCAAGGAAAAAGGAAAAACTAGCGTTAACATGGCAAGTGATGGAACACGACCTACAGTTATTGGTTAATATGGCAATGTTTCCAACAGATAGGGAAAGATACCGTGAGATTGAAATGATGAATAAAACTGCTGAGGCATCCTCTGATTTCATTATACCTTTGTTTAAATTCCAAAAGCAATGGTTGGCTTGGGCTTTGGATCGGGAACGGATTTTCAGAGGTGGAGTGCTTGCAGATGAAATGGGAATGGGAAAGACCATTCAAGCAATTGCCCTTGTCCTTGCCAAACGCGAACTCCAACCAAATGGATTTGCATCTTCTTCTGTAGTGTTGCCTTTGGTCAAAGGAACTCTTGTCATTTGTCCTGTGGTTGCCATCACTCAGTGGGCCGATGAGATTGACCGATGTACTTTGAAAGGAAGCACCAATGTTCTACTTTATCACGGAGCCGTGCAAACTAAGAACTGGAAACAATTTTCCGAGTATGATTTTGTGATAACTTCATACTCTATAGTTGAATCTGACTACAGGAATATGTCAAATTCGAATTGGCATGAGAGAAATTGTGAAGGACCTAGTGTTGTTAGTGAAGAAAAACCATCCAAGCAAGTTAAGGAAAATAAAACAAATGCTATGCCATCCCTATATGCTGTAAACTGGCAGCGGATCATACTGGATGAGGCACACTATATAATGTATAAGCGTTCTAATACCACTCAAGCAGTTTTTTCTTTAGAATCTACCTACAAATGGGCATTAAGTGGCTCTTTATTTCCGAGCCGGCCGAGAGAGTTGTATCCTGTGATAAGGTTCCTACAGATATATCCTTATTCCTATTACTTTTGCGAACACTGTAATTGTAAAGTTCTTCATCACAGGTCTGAATTGTGTTCAGACTGCTCCCATAGTTCTGGGGATCATTTCAATTGGTGGAACAAATACATTGCTAAACCAATTGAATCTTCTCCATCCAATGATGTTTGTGCAAAAAAAGCTATGATATTGCTCAAACACCAAATTTTGAAAAACTTGGTACTTAGTCGCACAAAAATAGGCATGGCTGCTGATCTTGAACTTCCACCTACAACTGTTTCAGTGAGAAGGGATTTCCTGGATAGAGAAGAGTTCGACTATTATGAAACAATATACAAGGAAGTTGAAGCAAAAGTTAATAGATATGTTGGAGAAAATGCTATAAGGCTTCGCCGTACTGAACTCCTTGTCCTTATCGCACGGCTGTGTAAGGTGACAGATCATCGATACCTTGTGGATGAGGAGTTAGGTGCTGAAAATCTATCATGTAATGCGGCTGACAAACAAGAAAGTAGCACTTGTCATGAGCCAGAAGAAGATCCTGTTGATTTAACTTCCAACGAGGATGTTAGGGATCAGGATGATAAAACCATGATTAAATATTCCAGATCCTCGAGAATTTTAAGAAAAATTGATCTTGAGAACTTTCAGACAAGCACTAAATTAGAGGCTTTGAGAGAAGAAATAAGATTCATGATTGAAAGAGATGGTTCTGCAAAAGGGATTGTTTTTGGCCGATTCCCACCATTTCTAGATCTTATATACTATTCTTTGTACAAGTCTGGAGTATCTTGCGTTATGTTGAAAGAAGGCATGTCACAGGCTGCACAGGATGATGTTGTTAATAGATTTAATGTTGAACCAGACTGCAGAATTTTGCTCATGACCTTTTGGGCTGGTGGTATTCCACTCAACTTGACAGTAGCGTCACATGTTTTCATTATGGACTCTTGTTGGAATCCAGCTTTAGAGCCTCAGGCTCCAGGCAGAATTCACCGAATTGGGCAATATAAACCTACAAGAGTTGTGAAGTTTGTCATTGCAAACACATTTGAGGAGAACATTTTCAACTTGATTGAGAGGAATAAATTAGTTGCTCAAGGGATTTTAAACAGTTCTTCTGAAGCTATGGAGGCGCAAGTGTCAATTGGGAAGTTAAAACTCTCAATTTCCTAA 2226 0.3949 MELRRSQRISNARSSGLIVSSYAEESDFEEEESDFEQENAGDGESSGIVVDQVIENKDNNEPPMVQVLHQPLPIEDGRKSRKKEKLALTWQVMEHDLQLLVNMAMFPTDRERYREIEMMNKTAEASSDFIIPLFKFQKQWLAWALDRERIFRGGVLADEMGMGKTIQAIALVLAKRELQPNGFASSSVVLPLVKGTLVICPVVAITQWADEIDRCTLKGSTNVLLYHGAVQTKNWKQFSEYDFVITSYSIVESDYRNMSNSNWHERNCEGPSVVSEEKPSKQVKENKTNAMPSLYAVNWQRIILDEAHYIMYKRSNTTQAVFSLESTYKWALSGSLFPSRPRELYPVIRFLQIYPYSYYFCEHCNCKVLHHRSELCSDCSHSSGDHFNWWNKYIAKPIESSPSNDVCAKKAMILLKHQILKNLVLSRTKIGMAADLELPPTTVSVRRDFLDREEFDYYETIYKEVEAKVNRYVGENAIRLRRTELLVLIARLCKVTDHRYLVDEELGAENLSCNAADKQESSTCHEPEEDPVDLTSNEDVRDQDDKTMIKYSRSSRILRKIDLENFQTSTKLEALREEIRFMIERDGSAKGIVFGRFPPFLDLIYYSLYKSGVSCVMLKEGMSQAAQDDVVNRFNVEPDCRILLMTFWAGGIPLNLTVASHVFIMDSCWNPALEPQAPGRIHRIGQYKPTRVVKFVIANTFEENIFNLIERNKLVAQGILNSSSEAMEAQVSIGKLKLSIS 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06255 741 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 354 IPR014001 -
Vivi2g06255 741 SMART helicmild6 602 685 IPR001650 -
Vivi2g06255 741 MobiDBLite consensus disorder prediction 521 538 - -
Vivi2g06255 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 727 IPR027417 -
Vivi2g06255 741 Gene3D - 439 738 IPR027417 -
Vivi2g06255 741 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 567 732 IPR001650 -
Vivi2g06255 741 MobiDBLite consensus disorder prediction 24 39 - -
Vivi2g06255 741 CDD SF2_C_SNF 569 696 - -
Vivi2g06255 741 MobiDBLite consensus disorder prediction 519 538 - -
Vivi2g06255 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 406 IPR027417 -
Vivi2g06255 741 SMART ultradead3 129 354 IPR014001 -
Vivi2g06255 741 Pfam Helicase conserved C-terminal domain 584 685 IPR001650 -
Vivi2g06255 741 Pfam SNF2-related domain 146 501 IPR000330 GO:0005524|GO:0140658
Vivi2g06255 741 CDD DEXDc_SHPRH-like 133 427 - -
Vivi2g06255 741 Gene3D - 135 374 IPR038718 -
Vivi2g06255 741 MobiDBLite consensus disorder prediction 20 46 - -
Vivi2g06255 741 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 58 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06255 Vivi-Chr2 197159957 197164772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06255 22 736 RAD5 or RAD16-like Gene Family AT1G05120 43.704 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g06255 SNF2_N 2.7e-38 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06255 K15083 - gmx:100786366 659.062