Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06254 ATGGAGCTTCGTCGTAGCCAACGCATTTCCAACGCAAGATCTTCTGGACTAATTGTGAGTAGTTATGCGGAAGAAAGTGATTTCGAGGAAGAAGAAAGTGATTTTGAACAAGAAAATGCTGGAGATGGAGAATCAAGTGGTATTGTTGTTGATCAAGTAATAGAGAACAAAGATAACAATGAACCACCAATGGTTCAGGTTCTGCATCAGCCACTTCCCATTGAAGATGGAAGGAAGTCAAGGAAAAAGGAAAAACTAGCGTTAACATGGCAAGTGATGGAACACGACCTACAGTTATTGGTTAATATGGCAATGTTTCCAACAGATAGGGAAAGATACCGTGAGATTGAAATGATGAATAAAACTGCTGAGGCATCCTCTGATTTCATTATACCTTTGTTTAAATTCCAAAAGCAATGGTTGGCTTGGGCTTTGGATCGGGAACGGATTTTCAGAGGTGGAGTGCTTGCAGATGAAATGGGAATGGGAAAGACCATTCAAGCAATTGCCCTTGTCCTTGCCAAACGCGAACTCCAACCAAATGGATTTGCATCTTCTTCTGTAGTGTTGCCTTTGGTCAAAGGAACTCTTGTCATTTGTCCTGTGGTTGCCATCACTCAGTGGGCCGATGAGATTGACCGATGTACTTTGAAAGGAAGCACCAATGTTCTACTTTATCACGGAGCCGTGCAAACTAAGAACTGGAAACAATTTTCCGAGTATGATTTTGTGATAACTTCATACTCTATAGTTGAATCTGACTACAGGAATATGTCAAATTCGAATTGGCATGAGAGAAATTGTGAAGGACCTAGTGTTGTTAGTGAAGAAAAACCATCCAAGCAAGTTAAGGAAAATAAAACAAATGCTATGCCATCCCTATATGCTGTAAACTGGCAGCGGATCATACTGGATGAGGCACACTATATAATGTATAAGCGTTCTAATACCACTCAAGCAGTTTTTTCTTTAGAATCTACCTACAAATGGGCATTAAGTGGCTCTTTATTTCCGAGCCGGCCGAGAGAGTTGTATCCTGTGATAAGGTTCCTACAGATATATCCTTATTCCTATTACTTTTGCGAACACTGTAATTGTAAAGTTCTTCATCACAGGTTTGGTGATTCGTTTCTTACAATGAGTTGTGTGCATTCATTAGTCATACATGAAGCATATGTGGAAACTGGAAAGATAGGGTCTGAATTGTGTTCAGACTGCTCCCATAGTTCTGGGGATCATTTCAATTGGTGGAACAAATACATTGCTAAACCAATTGAATCTTCTCCATCCAATGATGTTTGTGCAAAAAAAGCTATGATATTGCTCAAACACCAAATTTTGAAAAACTTGGTACTTAGTCGCACAAAAATAGGCATGGCTGCTGATCTTGAACTTCCACCTACAACTGTTTCAGTGAGAAGGGATTTCCTGGATAGAGAAGAGTTCGACTATTATGAAACAATATACAAGGAAGTTGAAGCAAAAGTTAATAGATATGTTGGAGAAAATGCTATAAGGCTTCGCCGTACTGAACTCCTTGTCCTTATCGCACGGCTGTGTAAGGTGACAGATCATCGATACCTTGTGGATGAGGAGTTAGGTGCTGAAAATCTATCATGTAATGCGGCTGACAAACAAGAAAGTAGCACTTGTCATGAGCCAGAAGAAGATCCTGTTGATTTAACTTCCAACGAGGATGTTAGGGATCAGGATGATAAAACCATGATTAAATATTCCAGATCCTCGAGAATTTTAAGAAAAATTGATCTTGAGAACTTTCAGACAAGCACTAAATTAGAGGCTTTGAGAGAAGAAATAAGATTCATGATTGAAAGAGATGGTTCTGCAAAAGGGATTGTTTTTGGCCGATTCCCACCATTTCTAGATCTTATATACTATTCTTTGTACAAGTCTGGAGTATCTTGCGTTATGTTGAAAGAAGGCATGTCACAGGCTGCACAGGATGATGTTGTTAATAGATTTAATGTTGAACCAGACTGCAGAATTTTGCTCATGACCTTTTGGGCTGGTGGTATTCCACTCAACTTGACAGTAGCGTCACATGTTTTCATTATGGACTCTTGTTGGAATCCAGCTTTAGAGCCTCAGGCTCCAGGCAGAATTCACCGAATTGGGCAATATAAACCTACAAGAGTTGTGAAGTTTGTCATTGCAAACACATTTGAGGAGAACATTTTCAACTTGATTGAGAGGAATAAATTAGTTGCTCAAGGGATTTTAAACAGTTCTTCTGAAGCTATGGAGGCGCAAGTGTCAATTGGGAAGTTAAAACTCTCAATTTCCTAA 2307 0.394 MELRRSQRISNARSSGLIVSSYAEESDFEEEESDFEQENAGDGESSGIVVDQVIENKDNNEPPMVQVLHQPLPIEDGRKSRKKEKLALTWQVMEHDLQLLVNMAMFPTDRERYREIEMMNKTAEASSDFIIPLFKFQKQWLAWALDRERIFRGGVLADEMGMGKTIQAIALVLAKRELQPNGFASSSVVLPLVKGTLVICPVVAITQWADEIDRCTLKGSTNVLLYHGAVQTKNWKQFSEYDFVITSYSIVESDYRNMSNSNWHERNCEGPSVVSEEKPSKQVKENKTNAMPSLYAVNWQRIILDEAHYIMYKRSNTTQAVFSLESTYKWALSGSLFPSRPRELYPVIRFLQIYPYSYYFCEHCNCKVLHHRFGDSFLTMSCVHSLVIHEAYVETGKIGSELCSDCSHSSGDHFNWWNKYIAKPIESSPSNDVCAKKAMILLKHQILKNLVLSRTKIGMAADLELPPTTVSVRRDFLDREEFDYYETIYKEVEAKVNRYVGENAIRLRRTELLVLIARLCKVTDHRYLVDEELGAENLSCNAADKQESSTCHEPEEDPVDLTSNEDVRDQDDKTMIKYSRSSRILRKIDLENFQTSTKLEALREEIRFMIERDGSAKGIVFGRFPPFLDLIYYSLYKSGVSCVMLKEGMSQAAQDDVVNRFNVEPDCRILLMTFWAGGIPLNLTVASHVFIMDSCWNPALEPQAPGRIHRIGQYKPTRVVKFVIANTFEENIFNLIERNKLVAQGILNSSSEAMEAQVSIGKLKLSIS 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06254 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 354 IPR014001 -
Vivi2g06254 768 Gene3D - 466 765 IPR027417 -
Vivi2g06254 768 Pfam Helicase conserved C-terminal domain 611 712 IPR001650 -
Vivi2g06254 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 594 759 IPR001650 -
Vivi2g06254 768 MobiDBLite consensus disorder prediction 24 39 - -
Vivi2g06254 768 MobiDBLite consensus disorder prediction 548 565 - -
Vivi2g06254 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 430 IPR027417 -
Vivi2g06254 768 SMART ultradead3 129 354 IPR014001 -
Vivi2g06254 768 CDD SF2_C_SNF 596 723 - -
Vivi2g06254 768 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 58 748 - -
Vivi2g06254 768 MobiDBLite consensus disorder prediction 546 565 - -
Vivi2g06254 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 754 IPR027417 -
Vivi2g06254 768 CDD DEXDc_SHPRH-like 133 370 - -
Vivi2g06254 768 Gene3D - 104 268 IPR038718 -
Vivi2g06254 768 Gene3D - 273 373 IPR038718 -
Vivi2g06254 768 Pfam SNF2-related domain 146 358 IPR000330 GO:0005524|GO:0140658
Vivi2g06254 768 SMART helicmild6 629 712 IPR001650 -
Vivi2g06254 768 MobiDBLite consensus disorder prediction 20 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06254 Vivi-Chr2 197159957 197164773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06254 22 763 RAD5 or RAD16-like Gene Family AT1G05120 42.584 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g06254 SNF2_N 3.1e-38 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06254 K15083 - gmx:100786366 644.81