Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06253 ATGGAGCTTCGTCGTAGCCAACGCATTTCCAACGCAAGATCTTCTGGACTAATTGTGAGTAGTTATGCGGAAGAAAGTGATTTCGAGGAAGAAGAAAGTGATTTTGAACAAGAAAATGCTGGAGATGGAGAATCAAGTGGTATTGTTGTTGATCAAGTAATAGAGAACAAAGATAACAATGAACCACCAATGGTTCAGGTTCTGCATCAGCCACTTCCCATTGAAGATGGAAGGAAGTCAAGGAAAAAGGAAAAACTAGCGTTAACATGGCAAGTGATGGAACACGACCTACAGTTATTGGTTAATATGGCAATGTTTCCAACAGATAGGGAAAGATACCGTGAGATTGAAATGATGAATAAAACTGCTGAGGCATCCTCTGATTTCATTATACCTTTGTTTAAATTCCAAAAGCAATGGTTGGCTTGGGCTTTGGATCGGGAACGGATTTTCAGAGGTGGAGTGCTTGCAGATGAAATGGGAATGGGAAAGACCATTCAAGCAATTGCCCTTGTCCTTGCCAAACGCGAACTCCAACCAAATGGATTTGCATCTTCTTCTGTAGTGTTGCCTTTGGTCAAAGGAACTCTTGTCATTTGTCCTGTGGTTGCCATCACTCAGTGGGCCGATGAGATTGACCGATGTACTTTGAAAGGAAGCACCAATGTTCTACTTTATCACGGAGCCGTGCAAACTAAGAACTGGAAACAATTTTCCGAGTATGATTTTGTGATAACTTCATACTCTATAGTTGAATCTGACTACAGGAATATGTCAAATTCGAATTGGCATGAGAGAAATTGTGAAGGACCTAGTGTTGTTAGTGAAGAAAAACCATCCAAGCAAGTTAAGGAAAATAAAACAAATGCTATGCCATCCCTATATGCTGTAAACTGGCAGCGGATCATACTGGATGAGGCACACTATATAATGTATAAGCGTTCTAATACCACTCAAGCAGTTTTTTCTTTAGAATCTACCTACAAATGGGCATTAAGTGGCTCTTTATTTCCGAGCCGGCCGAGAGAGTTGTATCCTGTGATAAGGTTCCTACAGATATATCCTTATTCCTATTACTTTTGCGAACACTGTAATTGTAAAGTTCTTCATCACAGGTCTGAATTGTGTTCAGACTGCTCCCATAGTTCTGGGGATCATTTCAATTGGTGGAACAAAGTTTCAGTGAGAAGGGATTTCCTGGATAGAGAAGAGTTCGACTATTATGAAACAATATACAAGGAAGTTGAAGCAAAAGTTAATAGATATGTTGGAGAAAATGCTATAAGGCTTCGCCGTACTGAACTCCTTGTCCTTATCGCACGGCTGTGTAAGGTGACAGATCATCGATACCTTGTGGATGAGGAGTTAGGTGCTGAAAATCTATCATGTAATGCGGCTGACAAACAAGAAAGTAGCACTTGTCATGAGCCAGAAGAAGATCCTGTTGATTTAACTTCCAACGAGGATGTTAGGGATCAGGATGATAAAACCATGATTAAATATTCCAGATCCTCGAGAATTTTAAGAAAAATTGATCTTGAGAACTTTCAGACAAGCACTAAATTAGAGGCTTTGAGAGAAGAAATAAGATTCATGATTGAAAGAGATGGTTCTGCAAAAGGGATTGTTTTTGGCCGATTCCCACCATTTCTAGATCTTATATACTATTCTTTGTACAAGTCTGGAGTATCTTGCGTTATGTTGAAAGAAGGCATGTCACAGGCTGCACAGGATGATGTTGTTAATAGATTTAATGTTGAACCAGACTGCAGAATTTTGCTCATGACCTTTTGGGCTGGTGGTATTCCACTCAACTTGACAGTAGCGTCACATGTTTTCATTATGGACTCTTGTTGGAATCCAGCTTTAGAGCCTCAGGCTCCAGGCAGAATTCACCGAATTGGGCAATATAAACCTACAAGAGTTGTGAAGTTTGTCATTGCAAACACATTTGAGGAGAACATTTTCAACTTGATTGAGAGGAATAAATTAGTTGCTCAAGGGATTTTAAACAGTTCTTCTGAAGCTATGGAGGCGCAAGTGTCAATTGGGAAGTTAAAACTCTCAATTTCCTAA 2076 0.3974 MELRRSQRISNARSSGLIVSSYAEESDFEEEESDFEQENAGDGESSGIVVDQVIENKDNNEPPMVQVLHQPLPIEDGRKSRKKEKLALTWQVMEHDLQLLVNMAMFPTDRERYREIEMMNKTAEASSDFIIPLFKFQKQWLAWALDRERIFRGGVLADEMGMGKTIQAIALVLAKRELQPNGFASSSVVLPLVKGTLVICPVVAITQWADEIDRCTLKGSTNVLLYHGAVQTKNWKQFSEYDFVITSYSIVESDYRNMSNSNWHERNCEGPSVVSEEKPSKQVKENKTNAMPSLYAVNWQRIILDEAHYIMYKRSNTTQAVFSLESTYKWALSGSLFPSRPRELYPVIRFLQIYPYSYYFCEHCNCKVLHHRSELCSDCSHSSGDHFNWWNKVSVRRDFLDREEFDYYETIYKEVEAKVNRYVGENAIRLRRTELLVLIARLCKVTDHRYLVDEELGAENLSCNAADKQESSTCHEPEEDPVDLTSNEDVRDQDDKTMIKYSRSSRILRKIDLENFQTSTKLEALREEIRFMIERDGSAKGIVFGRFPPFLDLIYYSLYKSGVSCVMLKEGMSQAAQDDVVNRFNVEPDCRILLMTFWAGGIPLNLTVASHVFIMDSCWNPALEPQAPGRIHRIGQYKPTRVVKFVIANTFEENIFNLIERNKLVAQGILNSSSEAMEAQVSIGKLKLSIS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06253 691 Pfam SNF2-related domain 146 358 IPR000330 GO:0005524|GO:0140658
Vivi2g06253 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 677 IPR027417 -
Vivi2g06253 691 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 354 IPR014001 -
Vivi2g06253 691 Pfam Helicase conserved C-terminal domain 534 635 IPR001650 -
Vivi2g06253 691 Gene3D - 273 376 IPR038718 -
Vivi2g06253 691 Gene3D - 104 268 IPR038718 -
Vivi2g06253 691 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 57 671 - -
Vivi2g06253 691 SMART helicmild6 552 635 IPR001650 -
Vivi2g06253 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 356 IPR027417 -
Vivi2g06253 691 MobiDBLite consensus disorder prediction 24 39 - -
Vivi2g06253 691 Gene3D - 400 688 IPR027417 -
Vivi2g06253 691 SMART ultradead3 129 354 IPR014001 -
Vivi2g06253 691 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 517 682 IPR001650 -
Vivi2g06253 691 MobiDBLite consensus disorder prediction 469 488 - -
Vivi2g06253 691 CDD DEXDc_SHPRH-like 133 370 - -
Vivi2g06253 691 MobiDBLite consensus disorder prediction 471 488 - -
Vivi2g06253 691 MobiDBLite consensus disorder prediction 20 46 - -
Vivi2g06253 691 CDD SF2_C_SNF 519 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06253 Vivi-Chr2 197159957 197164773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06253 22 686 RAD5 or RAD16-like Gene Family AT1G05120 40.297 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g06253 SNF2_N 2.3e-38 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06253 K15083 - gmx:100786366 579.326