Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06252 ATGGAGCTTCGTCGTAGCCAACGCATTTCCAACGCAAGATCTTCTGGACTAATTGTGAGTAGTTATGCGGAAGAAAGTGATTTCGAGGAAGAAGAAAGTGATTTTGAACAAGAAAATGCTGGAGATGGAGAATCAAGTGGTATTGTTGTTGATCAAGTAATAGAGAACAAAGATAACAATGAACCACCAATGGTTCAGGTTCTGCATCAGCCACTTCCCATTGAAGATGGAAGGAAGTCAAGGAAAAAGGAAAAACTAGCGTTAACATGGCAAGTGATGGAACACGACCTACAGTTATTGGTTAATATGGCAATGTTTCCAACAGATAGGGAAAGATACCGTGAGATTGAAATGATGAATAAAACTGCTGAGGCATCCTCTGATTTCATTATACCTTTGTTTAAATTCCAAAAGCAATGGTTGGCTTGGGCTTTGGATCGGGAACGGATTTTCAGAGGTGGAGTGCTTGCAGATGAAATGGGAATGGGAAAGACCATTCAAGCAATTGCCCTTGTCCTTGCCAAACGCGAACTCCAACCAAATGGATTTGCATCTTCTTCTGTAGTGTTGCCTTTGGTCAAAGGAACTCTTGTCATTTGTCCTGTGGTTGCCATCACTCAGTGGGCCGATGAGATTGACCGATGTACTTTGAAAGGAAGCACCAATGTTCTACTTTATCACGGAGCCGTGCAAACTAAGAACTGGAAACAATTTTCCGAGTATGATTTTGTGATAACTTCATACTCTATAGTTGAATCTGACTACAGGAATATGTCAAATTCGAATTGGCATGAGAGAAATTGTGAAGGACCTAGTGTTGTTAGTGAAGAAAAACCATCCAAGCAAGTTAAGGAAAATAAAACAAATGCTATGCCATCCCTATATGCTGTAAACTGGCAGCGGATCATACTGGATGAGGCACACTATATAATGTATAAGCGTTCTAATACCACTCAAGCAGTTTTTTCTTTAGAATCTACCTACAAATGGGCATTAAGTGGCTCTTTATTTCCGAGCCGGCCGAGAGAGTTGTATCCTGTGATAAGGTTCCTACAGATATATCCTTATTCCTATTACTTTTGCGAACACTGTAATTGTAAAGTTCTTCATCACAGGTTTGGTGATTCGTTTCTTACAATGAGTTGTGTGCATTCATTAGTCATACATGAAGCATATGTGGAAACTGGAAAGATAGGGTCTGAATTGTGTTCAGACTGCTCCCATAGTTCTGGGGATCATTTCAATTGGTGGAACAAAGTTTCAGTGAGAAGGGATTTCCTGGATAGAGAAGAGTTCGACTATTATGAAACAATATACAAGGAAGTTGAAGCAAAAGTTAATAGATATGTTGGAGAAAATGCTATAAGGCTTCGCCGTACTGAACTCCTTGTCCTTATCGCACGGCTGTGTAAGGTGACAGATCATCGATACCTTGTGGATGAGGAGTTAGGTGCTGAAAATCTATCATGTAATGCGGCTGACAAACAAGAAAGTAGCACTTGTCATGAGCCAGAAGAAGATCCTGTTGATTTAACTTCCAACGAGGATGTTAGGGATCAGGATGATAAAACCATGATTAAATATTCCAGATCCTCGAGAATTTTAAGAAAAATTGATCTTGAGAACTTTCAGACAAGCACTAAATTAGAGGCTTTGAGAGAAGAAATAAGATTCATGATTGAAAGAGATGGTTCTGCAAAAGGGATTGTTTTTGGCCGATTCCCACCATTTCTAGATCTTATATACTATTCTTTGTACAAGTCTGGAGTATCTTGCGTTATGTTGAAAGAAGGCATGTCACAGGCTGCACAGGATGATGTTGTTAATAGATTTAATGTTGAACCAGACTGCAGAATTTTGCTCATGACCTTTTGGGCTGGTGGTATTCCACTCAACTTGACAGTAGCGTCACATGTTTTCATTATGGACTCTTGTTGGAATCCAGCTTTAGAGCCTCAGGCTCCAGGCAGAATTCACCGAATTGGGCAATATAAACCTACAAGAGTTGTGAAGTTTGTCATTGCAAACACATTTGAGGAGAACATTTTCAACTTGATTGAGAGGAATAAATTAGTTGCTCAAGGGATTTTAAACAGTTCTTCTGAAGCTATGGAGGCGCAAGTGTCAATTGGGAAGTTAAAACTCTCAATTTCCTAA 2157 0.3964 MELRRSQRISNARSSGLIVSSYAEESDFEEEESDFEQENAGDGESSGIVVDQVIENKDNNEPPMVQVLHQPLPIEDGRKSRKKEKLALTWQVMEHDLQLLVNMAMFPTDRERYREIEMMNKTAEASSDFIIPLFKFQKQWLAWALDRERIFRGGVLADEMGMGKTIQAIALVLAKRELQPNGFASSSVVLPLVKGTLVICPVVAITQWADEIDRCTLKGSTNVLLYHGAVQTKNWKQFSEYDFVITSYSIVESDYRNMSNSNWHERNCEGPSVVSEEKPSKQVKENKTNAMPSLYAVNWQRIILDEAHYIMYKRSNTTQAVFSLESTYKWALSGSLFPSRPRELYPVIRFLQIYPYSYYFCEHCNCKVLHHRFGDSFLTMSCVHSLVIHEAYVETGKIGSELCSDCSHSSGDHFNWWNKVSVRRDFLDREEFDYYETIYKEVEAKVNRYVGENAIRLRRTELLVLIARLCKVTDHRYLVDEELGAENLSCNAADKQESSTCHEPEEDPVDLTSNEDVRDQDDKTMIKYSRSSRILRKIDLENFQTSTKLEALREEIRFMIERDGSAKGIVFGRFPPFLDLIYYSLYKSGVSCVMLKEGMSQAAQDDVVNRFNVEPDCRILLMTFWAGGIPLNLTVASHVFIMDSCWNPALEPQAPGRIHRIGQYKPTRVVKFVIANTFEENIFNLIERNKLVAQGILNSSSEAMEAQVSIGKLKLSIS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06252 718 CDD SF2_C_SNF 546 673 - -
Vivi2g06252 718 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 544 709 IPR001650 -
Vivi2g06252 718 MobiDBLite consensus disorder prediction 496 515 - -
Vivi2g06252 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 356 IPR027417 -
Vivi2g06252 718 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 354 IPR014001 -
Vivi2g06252 718 MobiDBLite consensus disorder prediction 24 39 - -
Vivi2g06252 718 SMART ultradead3 129 354 IPR014001 -
Vivi2g06252 718 Gene3D - 427 715 IPR027417 -
Vivi2g06252 718 Pfam SNF2-related domain 146 358 IPR000330 GO:0005524|GO:0140658
Vivi2g06252 718 Pfam Helicase conserved C-terminal domain 561 662 IPR001650 -
Vivi2g06252 718 Gene3D - 104 268 IPR038718 -
Vivi2g06252 718 Gene3D - 273 373 IPR038718 -
Vivi2g06252 718 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 58 698 - -
Vivi2g06252 718 CDD DEXDc_SHPRH-like 133 370 - -
Vivi2g06252 718 MobiDBLite consensus disorder prediction 498 515 - -
Vivi2g06252 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 704 IPR027417 -
Vivi2g06252 718 MobiDBLite consensus disorder prediction 20 46 - -
Vivi2g06252 718 SMART helicmild6 579 662 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06252 Vivi-Chr2 197159957 197164774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06252 22 713 RAD5 or RAD16-like Gene Family AT1G05120 39.281 7.65e-178 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g06252 SNF2_N 2.7e-38 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06252 K15083 - gmx:100786366 565.074