Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06251 ATGGAGCTTCGTCGTAGTCAACGCATTTCCAATTCAAGATCTTCTGGACTAATTTTGACTAGTTACGAGGAAGAAGAGAGTGATTTTGAGGAAGAAGAAAATGCAAGAGAATCAAGTGGTATTGTTGTTGATGAAGTTATAGAGAACAAAGATAACAACGAACCGCCAATGGTTCAGGTTCTACAGCAGCCACTTCCCATTGATTTAACAGGAAATAAAACGAAGGTAGATGGAAGGAAGTCAAGGAAAAAGGAAAAGCCAGTGTTAAGATGGCAACTGAGGGAAAAGCAGCTCGATACATTTGTTCGTATGACAATGTTACAAGCAAAACACATAAGCTACAGGGAAAAAGATTATGAGGATGAAATGTTGGATAAAACTGCTGAGGCATCATCTGATTTCATCGTACCTTTGCTTAGATACCAAAAGGAATGGTTAGCCTGGGCTTTGGATCAGGAAAACAATTTCGGAGGTGGAGTGCTTGCAGACGAAAAGGGAATGGGAAAGACCATTGAAGCAATTGCTCTTGTCCTTGCCAAACGCGAACTCGAACAAAATGTAGTGTTGCCTTTGGTCAAAGGAACTCTTGTGATTTGTCCTGTGGTTGCTATTAATCAGTGGGTCGATGAGATTGATCGATGTACTTTAAAAGGAAGCACCAAGGTTCTAGTTTATCACGGGGCTGACTGGATTACGGATTGGAAAGAGTTCTCCGAGTGTGATTTTGTGATAACTTCATACTCTATTGTTGAATCTGAGTGCAGGAATAAGTCAAATTGCCGTGACAGAGATTGTGAAGGACCTAGTGTTGTTAGACACGAAAAACACTCCAAGGAAGTTAAGAAAGATAAATCAAATGCTATGCCAGCTCTACACGCTGTAAAGTGGCTGCGGATCGTACTGGATGAGGCACACTATATAAAAGATAATTGTTCTAAAACCACTCAAGCAGTGTTTGCTTTAGAATCTACATACAAATGGGCATTAAGTGGCACTCCATTTCAGAACCGTCCTGGAGAGTTGTATCCTCTGATAAGGTTCCTACAGATAAATCCTTATTCCTATTACTTTTGCAAACACTGTGATTGTAGAGTTCTTCATCACAGGTATGGGTTATGTTCAGACTGCTCCCATGGCTTTGGGGATCATTTCAATTGGTGGAATAAATACATTGCTAAACCAATTGAATCTTCTCCATCCAATGATGTTTGTGGGGAAAAAGCGATGATATTGCTCAAACACAAAATTTTGAAAAACTTGGTACTTAGACGTACAAAAATAGGCAGGGCTGCTGATCTTACACTTCCATCTACAACTGTTTCAGTGAGAAGGGATTTCTTGGATAGAGAAGAGCTCGACTATTATGAAACATTATACAAGGAATTTCAAACAAAACTTGAGAGTCTCTCATACAGATATGTTAGAGAAAATACTACAAGGCTTCACTGTAGCGAAATCGATGCCCTCTTCATACAGCTGTGTCAGGTAACATATCATCGCTACCTTGTGGAATTTTCTCAAAGTAAGGAGTTAAGTGCTGAAAATCTAGAAAGTGATGCGGCTGACAGACAAGAACGTGGCATTTGTCATGAGCCAAAAGAAGAACATGTGGATTTAACATCCAACGAGGACGTTAGGGATCAGGATGATAAAACCATGATTAAATATTTCAGATCCTTGAGAATTTTTGAAAAAATTGAGCTTGAGAACTTTCACACAAGCACTAAATTAGAGGCTTTGAGAGAAGAAATAAGATTCATGATTGAAAGAGATGGTTCTGCAAAAGGGATTGTTTTTTGCGAGTTCACATTATTCTTAGATCTTATACACTACTCTTTGTACAAGTCTGGAGTATCTTGCGTTCTGTTGAATGAAAGCATGTCACGGGCCACACGGGATGCTGTTGTTAATAGATTTAATGTTGAACCAGACTGCAGAATTTTGCTCATGACATTGAAGGCTGGCGGTTTTGCACTCAATTTGACAGTAGCATCGCATGTTTTCATTATGGACCCTTGTTGGAATCCAGCTTTAGAGCTTCAGGCTCTAGGAAGAATTCACCGAATTGGACAATATAAACCTACAAGAATTGTTATGTTTGTCATTGCAAACACGCTTGAAGAGGAGATTTTTAAGGCACTGGAGAATAAGAAACTAGTTGCTCAAGGGATTTTAAACGATTCTTTTGAAGCTATGGAGCAATTGTTAACTGAGGACTTTGAAATCTCTATATCTTGCTAA 2241 0.3913 MELRRSQRISNSRSSGLILTSYEEEESDFEEEENARESSGIVVDEVIENKDNNEPPMVQVLQQPLPIDLTGNKTKVDGRKSRKKEKPVLRWQLREKQLDTFVRMTMLQAKHISYREKDYEDEMLDKTAEASSDFIVPLLRYQKEWLAWALDQENNFGGGVLADEKGMGKTIEAIALVLAKRELEQNVVLPLVKGTLVICPVVAINQWVDEIDRCTLKGSTKVLVYHGADWITDWKEFSECDFVITSYSIVESECRNKSNCRDRDCEGPSVVRHEKHSKEVKKDKSNAMPALHAVKWLRIVLDEAHYIKDNCSKTTQAVFALESTYKWALSGTPFQNRPGELYPLIRFLQINPYSYYFCKHCDCRVLHHRYGLCSDCSHGFGDHFNWWNKYIAKPIESSPSNDVCGEKAMILLKHKILKNLVLRRTKIGRAADLTLPSTTVSVRRDFLDREELDYYETLYKEFQTKLESLSYRYVRENTTRLHCSEIDALFIQLCQVTYHRYLVEFSQSKELSAENLESDAADRQERGICHEPKEEHVDLTSNEDVRDQDDKTMIKYFRSLRIFEKIELENFHTSTKLEALREEIRFMIERDGSAKGIVFCEFTLFLDLIHYSLYKSGVSCVLLNESMSRATRDAVVNRFNVEPDCRILLMTLKAGGFALNLTVASHVFIMDPCWNPALELQALGRIHRIGQYKPTRIVMFVIANTLEEEIFKALENKKLVAQGILNDSFEAMEQLLTEDFEISISC 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06251 746 SMART ultradead3 134 357 IPR014001 -
Vivi2g06251 746 CDD SF2_C_SNF 574 701 - -
Vivi2g06251 746 Pfam Helicase conserved C-terminal domain 576 690 IPR001650 -
Vivi2g06251 746 SMART helicmild6 607 690 IPR001650 -
Vivi2g06251 746 Gene3D - 105 445 IPR038718 -
Vivi2g06251 746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 351 IPR014001 -
Vivi2g06251 746 MobiDBLite consensus disorder prediction 1 41 - -
Vivi2g06251 746 CDD DEXDc_SHPRH-like 138 424 - -
Vivi2g06251 746 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 40 726 - -
Vivi2g06251 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 739 IPR027417 -
Vivi2g06251 746 Pfam SNF2-related domain 152 472 IPR000330 GO:0005524|GO:0140658
Vivi2g06251 746 Gene3D - 446 743 IPR027417 -
Vivi2g06251 746 MobiDBLite consensus disorder prediction 516 544 - -
Vivi2g06251 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 424 IPR027417 -
Vivi2g06251 746 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 572 737 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06251 Vivi-Chr2 197136161 197140665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06251 61 740 RAD5 or RAD16-like Gene Family AT1G05120 46.065 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g06251 SNF2_N 1.1e-43 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06251 K15083 - gmx:100798333 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06251 2 197136161 197140665 Vivi2g06251 2 197136161 197140665 ECH