Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06250 ATGGTTCAGGTTCCGCAGCAGCCAATTCCCATTGATTTAACAGGAGCTGAAATGAAGGTAGATGGAAGGAAGTCTAGGAAAAAGGAAAAGCCAGTGTTAACATGGCAACTGAGGGAAAAGCAGCTCGATATATTTGTTCGTATGACAATGTTACAAGCAAAACACATTAACCCTAGGGCAAAAGATTATGACAGTGAAATGTTAAATAAAACTGCTGAGGCGTCTTCTGATTTTATTGTACCTTTGCTTAGATTCCAGAAAGAATGGTTAGCTTGGGCTTTGGATCAGGAACAAATTTTCGGAGGTGGAGTGCTTGCAGATGAAATGGGAATGGGAAAGACCATTCAAGCTATTGCCCTTGTTCTTGCCCAACGAGAACTCCAACAAAATGGATTTGCATTTTCACAATCACCTTTACCGTCTTCTTCTGAAGCATTGCCTTTGATCAAAGGAACTCTTGTCATTTGTCCTGTGGTAGCTATCACTCAGTGGGTCGATGAGATTAAGCGATGTACTTTAAAAGGAAGCACCAAGGTTCTAGCTTATCATGGGGTTGGCAGAGTTAAGATTTGGAAAGAGTTCTCCAAGTATGATTTTGTGATAACTTCATACTCTATTGTTGAATCTGAGTGCAGGAATATGTCGAATTCGAGTTGGCGTGAGAGAAATTGTGAAGGACCTAGTGTTGTTAAACAGGAAAAACGTAAGAAAAATGAATCAGATGCTATGCCAGCCCTACATGCTGTAAAGTGGCAGCGGATCATACTGGATGAGGCACACTTTATAAAAGATAAGCGTTCTAATACCACTCAAGCAGTTTTTGCTTTGGAATCTACCTACAAATGGGCATTAAGTGGCACTCCATTTCAGAACCGTCCTGGAGAGTTGTATCCTCTGATAAGGTTCCTACAGATAAATCCTTATTCCTATTACTTTTGCAAACGCTGTAATTGTAGAGTTCTTCATCACAGGTATGAATTATGTTCAGACTGCTCCCATGGTTCTGCGGATCATTTCAGTTGGTGGAATAAATACATTGCGAAACCAATTGAAAATTCTCGATCCAATGATGTTCATGGGAAAAATGCTATGATATTGCTCAATCACAAAATTTTGAAAAAATTAGTACTTAGGCGCACCAAAATAGGCAGGGCTTCTGATGTTGCACTTCCACCTTCAACTGTTTCAGTGAGAATGGATTTCCTGGATAGAGAAGAGCTTGACTATTATGAGACCTTATACAGGGAATTTCAACCAAAATTTGATAGATATGCTAGGGAAAAGATGAGGGATCACTATGTTGAAATCGTTGACCTCATCACACGGCTGCGTCAGGTAACAAATCATCGATACCTTGTGGAATTTTCTCAAAAAGAGGAGTTAAGTGCTGAAGATCTGGCAAGTAATGCAGCTGACAAACAAGAAGGTGACATTTGTCATACGCCAGAAGAAGATCCTGTTGGTTTAACTTCCAACGAGGATGTTAGGGATCAGGATGATAAAACCATGGTTAAATACTTCAAATCCTCGAGAATATTAAAAAAAATTGAGCTCGAGAACTTTCAGACAAGCACTAAATTGGAGGCTTTGAGAGAAGAAATAAGATTCATGATGGAAAGAGATGGTTCTGCAAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTAGATCTTATATACTACTCTCTGTACAAGTCTGGAGTATCGTGTGTTCTGTTGAATGGAAGCATGTCACGAGCCGCACGGGATGCTGTTGTTAATAGATTTAACGTTGAACCAGACTGCAGAATTTTGCTCATGACCTTGAGGGCTGGTGGTGTTGCACTCAATTTGACAGTAGCATCACATGTTTTTATTACGGACCCTTGGTGGAATCCAGCTTTAGAGCTTCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCTACAAGAGTTGTGAAGTTAGTCATTGCAAACACAGTTGAGGAGAAGATTTTGAAGGTACTGGAGAAGAAGAAACTAGTTGCTAAAGGGATTTTAAGCGGTTCTTCTGAAGCTATGGAGCAATTGTCCGAGAGAGACTTGCAATATATATTTGCTAAATGA 2091 0.3984 MVQVPQQPIPIDLTGAEMKVDGRKSRKKEKPVLTWQLREKQLDIFVRMTMLQAKHINPRAKDYDSEMLNKTAEASSDFIVPLLRFQKEWLAWALDQEQIFGGGVLADEMGMGKTIQAIALVLAQRELQQNGFAFSQSPLPSSSEALPLIKGTLVICPVVAITQWVDEIKRCTLKGSTKVLAYHGVGRVKIWKEFSKYDFVITSYSIVESECRNMSNSSWRERNCEGPSVVKQEKRKKNESDAMPALHAVKWQRIILDEAHFIKDKRSNTTQAVFALESTYKWALSGTPFQNRPGELYPLIRFLQINPYSYYFCKRCNCRVLHHRYELCSDCSHGSADHFSWWNKYIAKPIENSRSNDVHGKNAMILLNHKILKKLVLRRTKIGRASDVALPPSTVSVRMDFLDREELDYYETLYREFQPKFDRYAREKMRDHYVEIVDLITRLRQVTNHRYLVEFSQKEELSAEDLASNAADKQEGDICHTPEEDPVGLTSNEDVRDQDDKTMVKYFKSSRILKKIELENFQTSTKLEALREEIRFMMERDGSAKGIVFSQFTSFLDLIYYSLYKSGVSCVLLNGSMSRAARDAVVNRFNVEPDCRILLMTLRAGGVALNLTVASHVFITDPWWNPALELQAQDRIHRIGQYKPTRVVKLVIANTVEEKILKVLEKKKLVAKGILSGSSEAMEQLSERDLQYIFAK 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06250 696 SMART helicmild6 557 640 IPR001650 -
Vivi2g06250 696 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 522 686 IPR001650 -
Vivi2g06250 696 MobiDBLite consensus disorder prediction 472 494 - -
Vivi2g06250 696 Gene3D - 398 696 IPR027417 -
Vivi2g06250 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 694 IPR027417 -
Vivi2g06250 696 Pfam Helicase conserved C-terminal domain 527 640 IPR001650 -
Vivi2g06250 696 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 24 694 - -
Vivi2g06250 696 Gene3D - 54 397 IPR038718 -
Vivi2g06250 696 MobiDBLite consensus disorder prediction 476 494 - -
Vivi2g06250 696 Pfam SNF2-related domain 95 452 IPR000330 GO:0005524|GO:0140658
Vivi2g06250 696 Coils Coil 513 533 - -
Vivi2g06250 696 CDD SF2_C_SNF 524 651 - -
Vivi2g06250 696 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 306 IPR014001 -
Vivi2g06250 696 SMART ultradead3 78 312 IPR014001 -
Vivi2g06250 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 379 IPR027417 -
Vivi2g06250 696 CDD DEXDc_SHPRH-like 82 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06250 Vivi-Chr2 197126392 197130968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06250 7 694 RAD5 or RAD16-like Gene Family AT1G05120 48.539 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g06250 SNF2_N 1.2e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06250 K15083 - gmx:100798333 733.406