Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06247 ATGGAGATGGAGTGGACAAGAGGCAACATCATCGGACAAGGCTCATCCGCCACTGTCTACCTTGCCATCTCTCCCCTCTCCTCCGATGTCTCCGCTGTTAAATCAGCGGAAACATCGACTTCAACATCGGTTTCAAACTCCAAACAACTCCAGAGAGAACAGAGAATTTTGTCTTCTCTGTCCTCTCCCTACATAGTTACATACAAAGGTTGCAATTTCACAAAGGAGAATCACAAGAGTTGGTTCAACCTCTTCATGGAGTATATGCCGTTTGGAAATCTCTCCGAGGAGACGCGACGAAACGGCGGCCGGCTTAACGAGCCGATGATGGCACACTACACAAGACAGATTGTGGAAGGACTAGAGTACTTGCATTCAAAAGGTGTTGTGCATTGTGATATCAAAGGTAGTAACATATTGGTTGGTGAAAAAGGAGTTAAAATCGGAGACTTTGGTTGCGCAAAGATGGTTGATGAAATTGGGCTGATCGCCGGAACTCCGATGTATATGTCGCCGGAAGCAGCGCGAGGTGAAGAACAAGGGTATCCTTGTGATGTTTGGTCGCTTGGTTGTACTGTTATTGAAATGGCAACTGGTTTTTCACCTTGGTCCAATGTGGATGACCCTGTTAATGTTCTGTTTCGTGTTGCGTATTCCGATGAAGTTCCGACGATTCCGTGTTTTCTTTCGGAACAAGCAAAGGATTTCTTGAGAAAGTGTTTTGTAAGGGATCCTAAGGAGAGATGGAGTTGTGGTCAGTTGTTGAAGCATCCGTTTCTTGAGAAAATTCAAGAGTTTGATTCGTGTTCGCCGACTAGTATTCTCGAACAAGGCTTTTGGAATTGCGAAGAGGATTCGGAAAGTTTGGTTTTTGATGATTTGGGTAAGATTGGTTTTGAGAATTGTGCTGTTGATAGGATCAAAAAGCTTGCTTTGTGTTCAAGGGATCCATGTTGGAAATTGGGTGATGAAAATTGGATTATAGCTAGAGGAAATGATGCAGATGAGTCTTCAATTAGTGATGTTAATGATAGGATTAGTAGTGATTATTTTTGTGAGGATTATACTAATTGTTTGATTAGTGATGTTAGTTTTGTAGTTAATAGTTTTGATTTTGAGAGAGGCATTGGGAAGTTACTGATGCCAAATTCATCATTAGATTGGTTATAA 1170 0.4188 MEMEWTRGNIIGQGSSATVYLAISPLSSDVSAVKSAETSTSTSVSNSKQLQREQRILSSLSSPYIVTYKGCNFTKENHKSWFNLFMEYMPFGNLSEETRRNGGRLNEPMMAHYTRQIVEGLEYLHSKGVVHCDIKGSNILVGEKGVKIGDFGCAKMVDEIGLIAGTPMYMSPEAARGEEQGYPCDVWSLGCTVIEMATGFSPWSNVDDPVNVLFRVAYSDEVPTIPCFLSEQAKDFLRKCFVRDPKERWSCGQLLKHPFLEKIQEFDSCSPTSILEQGFWNCEEDSESLVFDDLGKIGFENCAVDRIKKLALCSRDPCWKLGDENWIIARGNDADESSISDVNDRISSDYFCEDYTNCLISDVSFVVNSFDFERGIGKLLMPNSSLDWL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06247 389 SUPERFAMILY Protein kinase-like (PK-like) 5 270 IPR011009 -
Vivi2g06247 389 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Vivi2g06247 389 CDD STKc_MAPKKK 4 260 - -
Vivi2g06247 389 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 314 - -
Vivi2g06247 389 Gene3D Transferase(Phosphotransferase) domain 1 2 290 - -
Vivi2g06247 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vivi2g06247 389 ProSiteProfiles Protein kinase domain profile. 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06247 389 SMART serkin_6 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06247 389 Pfam Protein kinase domain 7 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06247 Vivi-Chr2 197104444 197105744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06247 3 310 MAP Kinase Kinase Kinase AT2G32510 47.463 5.41e-104 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi2g06247 Pkinase 4.8e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06247 K20716 - gmx:100797801 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06247 2 197104444 197105744 Vivi2g06247 2 197104444 197105744 ECH
Vivi2g06247 2 197104444 197105744 Vivi1g00218 1 4262379 4265221 ECH