Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06228 ATGGATGAGGTTCCTGTGTTGGAAGAGAATGAAACAAAGTCTGAGGCGCATTTGACTTCTGCTGCTGCTTTTGTGGAAGGTGGAATTCAGGATGCTTGTGATGATTCTTGCAGTATATGCCTTGAATCGTTTTGTGACAGTGATCCTTCTACGGTGACGAGTTGCAAACACGAGTTTCATCTTCAATGTATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGCCCTATGTGTTGGCAATCTATCAGTCTCAAGGATCCCTTGAGCCAGGAATTGCTCGAGGGAGTTGAGAGGGAGAGGAACTTTAGGTTAAATCCGTCTAGAAATGCCACAATATTTCATCATCCAACACTTGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCTGCAGCAGCAATGGGGCGAGCACGCCATATTGCTAGAAGGGAAGGCCAGAGAAATAGGTCATCAGCTCAAGGTCGCCCACAGTATTTGGTATTTTCAGCTCATCCCAATTCACCTCCTACGGCTCCTGCTTCTTCCTCTCCATCTCAGAGAGGGGATGGTGAACCAACTCATGCGACTGGGCAAGACACACCACAGCTCACTTTGATTCCTCCAGTTCAAACCGACCAGGTTTCTGCTTCAGGATCTGGGTCTACTGCTCCTGCTACCGACAATCAGGGATTATTGTATAACAACAGGAGATCTCCTAGTCAGTCTTCTCCAAGTAGCCAAGACAGAGCTGGACCATCAGAACTGCAATCATTTTCAGAATCTCTGAAAACTAAACTTAATGCTGTGTCAACAAGATACAAAGAGTCCATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGGTGGTTTTCTCGAAACAGCCCTATGTCTGATCTTGGATCTGAAGTTAAGCGAGAAGTTAATGCAGGAATTGCAACTGTGTCACGGATGATGGAACGCTTGGAGACTAGAGAGAATGATAGAAGCAATGGCAGTTCTGCTCCAAGTAATTTAGAGGACGGTCCAATTCAGAGATCAAATGATCAGCATTTAACAGACACTGAAAGGGACAGTGTTTCAAGAGACAATGACACAAAAACATCTTGCACTGCAGGTTCTAGTTCAAATTAA 1149 0.4508 MDEVPVLEENETKSEAHLTSAAAFVEGGIQDACDDSCSICLESFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPLSQELLEGVERERNFRLNPSRNATIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPQYLVFSAHPNSPPTAPASSSPSQRGDGEPTHATGQDTPQLTLIPPVQTDQVSASGSGSTAPATDNQGLLYNNRRSPSQSSPSSQDRAGPSELQSFSESLKTKLNAVSTRYKESISKSTRGWKERWFSRNSPMSDLGSEVKREVNAGIATVSRMMERLETRENDRSNGSSAPSNLEDGPIQRSNDQHLTDTERDSVSRDNDTKTSCTAGSSSN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06228 382 Pfam Ring finger domain 35 77 IPR001841 -
Vivi2g06228 382 MobiDBLite consensus disorder prediction 177 268 - -
Vivi2g06228 382 FunFam E3 ubiquitin-protein ligase RHF2A 8 111 - -
Vivi2g06228 382 MobiDBLite consensus disorder prediction 174 268 - -
Vivi2g06228 382 MobiDBLite consensus disorder prediction 355 369 - -
Vivi2g06228 382 SUPERFAMILY RING/U-box 30 84 - -
Vivi2g06228 382 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 15 86 - -
Vivi2g06228 382 ProSiteProfiles Zinc finger RING-type profile. 37 77 IPR001841 -
Vivi2g06228 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 85 IPR013083 -
Vivi2g06228 382 SMART ring_2 37 77 IPR001841 -
Vivi2g06228 382 MobiDBLite consensus disorder prediction 323 382 - -
Vivi2g06228 382 MobiDBLite consensus disorder prediction 334 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06228 Vivi-Chr2 196833103 196837314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06228 34 87 C3H Transcription Factor Family AT4G00335 44.444 4.27e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06228 K19043 - gmx:100780275 598.201