Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06225 ATGTCAATGGATGTGATGGCAAATGAACGTGTTTGCTATGTTCACTGCAACTTCTGCAACACTACTCTTGCGGTAAGTGTTCCATGCAGTAGCTTGCTGACTATAGTGACAGTTAGATGTGGGCATTGTGCCAATTTGCTTTCGGTTAACATGGGAGCATCACTTCAATCTTTTCCACCTCAACAAGATCCTCAGAAACAGCAGCTTGTAAGCGGTCATCAAGAACCAATTAGCAGGAAGGAAGTTGTAGGATCATCATCTTCATCTTCTTCAAAATGCAAAGCTTTTCAGCCTCACGAGCAACCTAGGACTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTACCTTCTGCTTATAATCGCTTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAAGCTTTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGTTGGATGGTAGCAAGCAAGCAAAGTTGGACCATGGGGTTGGGGACACTGCTCAAAAGTCTAACGGATTCTATTGA 561 0.4367 MSMDVMANERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQSFPPQQDPQKQQLVSGHQEPISRKEVVGSSSSSSSKCKAFQPHEQPRTPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDHGVGDTAQKSNGFY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06225 186 CDD HMG-box_SF 115 151 - -
Vivi2g06225 186 Gene3D High mobility group box domain 98 157 IPR036910 -
Vivi2g06225 186 Pfam YABBY protein 7 161 IPR006780 GO:0007275
Vivi2g06225 186 PANTHER PROTEIN YABBY 6-RELATED 1 170 IPR006780 GO:0007275
Vivi2g06225 186 SUPERFAMILY HMG-box 99 154 IPR036910 -
Vivi2g06225 186 MobiDBLite consensus disorder prediction 57 97 - -
Vivi2g06225 186 FunFam Axial regulator YABBY 106 176 - -
Vivi2g06225 186 MobiDBLite consensus disorder prediction 57 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06225 Vivi-Chr2 196783508 196789964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06225 1 186 C2C2-YABBY Transcription Factor Family AT1G08465 65.104 3.11e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vivi2g06225 YABBY 2.2e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06225 K25796 - gmx:100785458 289.271