Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06223 ATGTCAATGGATGTGATGGCAAATGAACGTGTTTGCTATGTTCACTGCAACTTCTGCAACACTACTCTTGCGGTAAGTGTTCCATGCAGTAGCTTGCTGACTATAGTGACAGTTAGATGTGGGCATTGTGCCAATTTGCTTTCGGTTAACATGGGAGCATCACTTCAATCTTTTCCACCTCAACAAGATCCTCAGTTACAGAAACAGCAGCTTGTAAGCGGTCATCAAGAACCAATTAGCAGGAAGGAAGTTGTAGGATCATCATCTTCATCTTCTTCAAAATGCAAAGCTTTTCAGCCTCACGAGCAACCTAGGACTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTACCTTCTGCTTATAATCGCTTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAAGCTTTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGTTGGATGGTAGCAAGCAAGCAAAGTTGGACCATGGGGTTGGGGACACTGCTCAAAAGTCTAACGGATTCTATTGA 567 0.4356 MSMDVMANERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQSFPPQQDPQLQKQQLVSGHQEPISRKEVVGSSSSSSSKCKAFQPHEQPRTPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDHGVGDTAQKSNGFY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06223 188 CDD HMG-box_SF 117 153 - -
Vivi2g06223 188 Gene3D High mobility group box domain 100 159 IPR036910 -
Vivi2g06223 188 PANTHER PROTEIN YABBY 6-RELATED 1 172 IPR006780 GO:0007275
Vivi2g06223 188 Pfam YABBY protein 7 163 IPR006780 GO:0007275
Vivi2g06223 188 MobiDBLite consensus disorder prediction 58 118 - -
Vivi2g06223 188 FunFam Axial regulator YABBY 108 178 - -
Vivi2g06223 188 MobiDBLite consensus disorder prediction 58 99 - -
Vivi2g06223 188 SUPERFAMILY HMG-box 101 156 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06223 Vivi-Chr2 196783508 196789985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06223 1 188 C2C2-YABBY Transcription Factor Family AT1G08465 65.104 5.12e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vivi2g06223 YABBY 7.6e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06223 K25796 - gmx:100785458 288.115