Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06220 ATGGCTCCCAGAGACAACAGAGTGGCCACCGCACTTTCCGGCCCCAACCCGTCAACCCCAAAAGAGATCCGTTTCAGAGGCGTCCGGAAGCGTCCCTGGGGTCGTTACGCCGCCGAGATCCGTGACCCAGGCAAGAAGACACGTGTCTGGCTTGGAACATTCGACACCGCTGAAGAAGCGGCGCGTGCTTATGACGCTGCAGCACGCGAGTTTCGCGGCGCGAAAGCGAAGACCAATTTCCCTACACCGATGGAGATTGTGAATATGAATGTTAACAACACGACACGCAGCCCGAGTCAGAGTAGCACTCTCGAGTCACCGTCACCGCCGCCGCTTGATCTGTCTCTCACACCATTCTCCGGCGGTTCCGGTGTTACCGTGGCGTTCCCCGTTGCGCGTCCTGTTTTGTTTTTCGACGCTTTCGCTCGCGCTGAGACCAGCCTTAGTATTGGCCGTCGTGAGATTTGCGGGTTTGACCGTCCTGTAACCGATTTCCGACGCGCCGCCGTGCAGAGTGATTCTGATTCTTCTTCTGTTGTTGGTTACGAGCGTGTGCCACGTCAGAGACTCCTGGATCTTGACCTTAACGTTCCTCCTCCACCTGAAGTTGCTTGA 615 0.5691 MAPRDNRVATALSGPNPSTPKEIRFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPMEIVNMNVNNTTRSPSQSSTLESPSPPPLDLSLTPFSGGSGVTVAFPVARPVLFFDAFARAETSLSIGRREICGFDRPVTDFRRAAVQSDSDSSSVVGYERVPRQRLLDLDLNVPPPPEVA 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06220 204 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Vivi2g06220 204 MobiDBLite consensus disorder prediction 92 110 - -
Vivi2g06220 204 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Vivi2g06220 204 MobiDBLite consensus disorder prediction 1 22 - -
Vivi2g06220 204 MobiDBLite consensus disorder prediction 92 114 - -
Vivi2g06220 204 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Vivi2g06220 204 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Vivi2g06220 204 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vivi2g06220 204 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Vivi2g06220 204 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vivi2g06220 204 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vivi2g06220 204 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Vivi2g06220 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06220 Vivi-Chr2 196740042 196741088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06220 21 139 AP2-EREBP Transcription Factor Family AT3G15210 64.394 1.56e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi2g06220 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06220 K09286 - gmx:100500601 226.483