Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06218 ATGGAAAGCTTCTACCACCATAGTTTCTCCCACATCAACAACATGAACAATAACAGTGATGCTCATTTACCACCTGGTTTTCGTTTCCATCCTACTGATGAAGAACTCATCACGTTCTACCTTCTGAAGAAAGTTCTTGACAACACTTTCACTGCAAGAGCCATAGCTGAAGTTGATCTCAACAAATGTGAACCATGGGAGCTACCAGAGAAAGCTAAGATGGGTGAGAAAGAATGGTACTTCTTCAGTTTACGTGACAGGAAGTACCCAACTGGGTTACGTACTAATCGAGCTACAGAAGCTGGTTATTGGAAAGCAACAGGGAAAGACAGAGAGATTTACAGTTCCAAAACCTACTCTCTTGTTGGTATGAAGAAAACCCTTGTTTTCTACAGAGGAAGAGCACCAAAAGGTGAAAAGAGTAACTGGGTTATGCATGAGTATCGTCTTGAAGGCAAATTTGCTTACCATTTCCTCTCTAGAAACTCCAAGGATGAATGGGTGATATCACGTGTTTTCCAAAAGAGCAACACCGGAAACGGAAGCACCACCGTGACAGCCACCACAAGTGGTTCAAAAAAGACCAAAATAGCCTCAACAGCTTCTGCAAGTAACAACAATATGAGTCTTTGCGCTGAACCAAGTTCACCTTCTTCAGTTTATCTACCACCACTACTTGATTCATCTCCATACTCCAACAACGCTGCCGCTAGCACCGCCGCATTCAACGGCGGTCAAATGTGTTCTTACAACAACAGCTCCAACAACACTGATCTAAAGGAGCACGTGTCCTGTTTCTCCACATCATCTACAACATCAAATGTTGTATCTGGTCTCAACAACAGCTTTAACAACAACAACAACAATGGAAGTTTTGATCTTATTTCTCCTTCTATGAATGCAACAACAATGGATCCATTTGCAAGGTTTCAGAGAAATGTCGGTGTTTCTGCTTTTCCAAGCTTGAGATCACTGCAAGATAATCTTCAGCTGCCTTTCTTTTTTTCCTCTGCGGCGGCGCAACCTTTAAGCGGTGGTGATGTTCTTGGGGGGTGGGGTATGCCGCAGGAGGAGCAAAGAACGGTGGTTGACGGTGGTGGTCATAACATGGGAGGGTTAGGTTCATCTGAGCTTGATTGCATGTGGAACTATTAA 1155 0.4355 MESFYHHSFSHINNMNNNSDAHLPPGFRFHPTDEELITFYLLKKVLDNTFTARAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKSNTGNGSTTVTATTSGSKKTKIASTASASNNNMSLCAEPSSPSSVYLPPLLDSSPYSNNAAASTAAFNGGQMCSYNNSSNNTDLKEHVSCFSTSSTTSNVVSGLNNSFNNNNNNGSFDLISPSMNATTMDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSSAAAQPLSGGDVLGGWGMPQEEQRTVVDGGGHNMGGLGSSELDCMWNY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06218 384 FunFam NAC domain-containing protein 100-like 32 179 - -
Vivi2g06218 384 SUPERFAMILY NAC domain 19 175 IPR036093 GO:0003677|GO:0006355
Vivi2g06218 384 Pfam No apical meristem (NAM) protein 24 150 IPR003441 GO:0003677|GO:0006355
Vivi2g06218 384 ProSiteProfiles NAC domain profile. 23 175 IPR003441 GO:0003677|GO:0006355
Vivi2g06218 384 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 266 - -
Vivi2g06218 384 Gene3D NAC domain 32 180 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06218 Vivi-Chr2 196650502 196652541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06218 22 384 NAC Transcription Factor Family AT5G53950 52.030 6.94e-117 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g06218 NAM 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06218 - - vun:114185732 436.802