Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06217 ATGAACAATAGCAGTGATGCTCATTTACCACCTGGTTTTCGTTTCCATCCTACTGATGAAGAGCTCATTACATTCTACCTTCTCAAGAAAGTTCTTGACAACACTTTCACTGCAAGAGCCATAGCTGAAGTTGATCTCAACAAATGTGAACCATGGGAGCTACCAGAGAAAGCTAAGATGGGTGAGAAAGAATGGTACTTCTTCAGTTTACGTGACAGGAAGTACCCAACTGGGTTACGTACAAATCGAGCTACAGAAGCTGGTTATTGGAAAGCAACAGGGAAAGACAGAGAGATTTACAGTTCCAAAACCTACTCTCTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGAAGAGCGCCGAAAGGTGAAAAGAGTAACTGGGTTATGCATGAGTATCGTCTTGAAGGCAAATTTGCTTACCATTTCCTCTCTAGAAACTCCAAGGATGAATGGGTGATATCGCGTGTGTTTCAAAAGAGCAACACTGGAAATGGAAGCACCACTGTGACAGCCACCACAAGTGGTTCAAAGAAGACCAAAATGGCCCCAACAACTTCTGCAAGTAACAACAATATGAGTCTTTGCGCTGAACCAAGTTCACCTTCTTCAGTTTATCTTCCGCCTCTACTTGATTCATCTCCATACTCCAACAACGCCGCTGCTAGCACCACCGCATTCAACGGCGGTCAAATGTGTTCTTACAACAACAGCTCCAACAACACTGATCAAAAGGAGCACGTGTCCTGTTTCTCCACATCATCTACAACATCAAATGTTGTCTCTGGTGACAACAACAGCTTTAACATAAACAACATCGGAAGTTTTGATCTTGTTTCTCCTTCTATGAATGCAGCAACAATGGATCCATTTGCAAGGTTTCAGAGAAATGTCGGTGTTTCTGCTTTTCCAAGCTTGAGATCACTGCAAGATAATCTTCAGCTGCCTTTCTTTTTCTCCAGTGCGGCGGCGCAGCCTTTTCACGGTGGTGATGTTCTTGGGGGGTGGGGTATGCCGCAGGAGGAGCAAAGAGCGGTGGTTGACGGTGGTGGTCATAACATGGGAGGGTTAGGTTCATCTGAGCTTGATTGCATGTGGAACTATTAA 1110 0.4423 MNNSSDAHLPPGFRFHPTDEELITFYLLKKVLDNTFTARAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKSNTGNGSTTVTATTSGSKKTKMAPTTSASNNNMSLCAEPSSPSSVYLPPLLDSSPYSNNAAASTTAFNGGQMCSYNNSSNNTDQKEHVSCFSTSSTTSNVVSGDNNSFNINNIGSFDLVSPSMNAATMDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSSAAAQPFHGGDVLGGWGMPQEEQRAVVDGGGHNMGGLGSSELDCMWNY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06217 369 SUPERFAMILY NAC domain 7 161 IPR036093 GO:0003677|GO:0006355
Vivi2g06217 369 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 241 - -
Vivi2g06217 369 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Vivi2g06217 369 MobiDBLite consensus disorder prediction 164 193 - -
Vivi2g06217 369 FunFam NAC domain-containing protein 100-like 18 165 - -
Vivi2g06217 369 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Vivi2g06217 369 Pfam No apical meristem (NAM) protein 10 136 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06217 Vivi-Chr2 196614110 196616143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06217 8 369 NAC Transcription Factor Family AT5G53950 52.417 5.07e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g06217 NAM 1.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06217 - - vun:114185732 436.802