Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06209 ATGGAGGATCTTGCAGGTCTAGTTGAGGCAACAGGATCAAGATTCACTTCATTGGAGCTTATTGGACAGGGATCATTTGGCGATGTATATAAAGGGTTTGACAGGGAACTAAACAAAGAAGTTGCCATCAAAGTGATTGATTTGGAAGAATCAGAGGATGACATTGACGATATTCAGAAGGAAGTTTCTGTTCTGTCACAATGTCGATGTCCATATATTACCGAATATTATGGTTCTTTTCTCAACCAGACTAAACTATGGATAATAATGGAGTATATGGCTGGCGGCTCTGTTGCTGATCTACTCCAATCAGGTCCTCCCTTAGATGAAATGTCAATTGCTTACATTCTTCGTGACTTGTTGCATGCTGTCGATTACCTACATAGTGAAGGAAAAATCCATAGAGACATTAAAGCTGCAAACATTTTATTGTCAGAGAATGGTGACGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAGTTGACAAGGACTATATCAAGGAGAAAGACATTTGTAGGAACACCATTCTGGATGGCGCCCGAGGTTATTCAGAACACAGATGGATATAATGAGAAGGCAGATATCTGGTCTCTGGGGATCACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGGGTGCTTTTCATCATACCCCGAGAAAATCCTCCGCAGCTAGATGAGCATTTTTCTCGCCCCATGAAAGAATTTGTTTCATCATGTTTGAAGAAGGTTCCGGCCGAGAGGCTAAGTGCTAAGGAACTTCTCAAAGACCGTTTTATTCGGAATGCTAGGAAGAGTACAAAGCTTTTGGAAAGAATAAGGGAGCGTCCAAAATTCCAACTTAAAGAAGACCTGGAGACACCTAGAAATGGCTCAAGAGGGATTGGTGAAGGATCTGATACTATGAAAGTGGCAAGAGATTCTAGAGTTGAAGAAAATAATCGACCTAGCAGTCAGGGTAAAACCCTGAAAAGTTCTGAATGGGACTTCAGCATTGGTGAATCAGAGGGTACTGGAACCTTTCGAAATGTTTCACGGCCACCTCAGTCTAGAGATAAGAAAACAGATGTTTCATATAATCAGCTTACCCAAAAAAAAGCTCCAGACGCAGGCTATCAAGGGGGGTATGCCAATAGAATTGCGGCCAATCAATCACTTGATAATCAGCTTGAAGATGATGAATTATCTGGATCAGGAACTGTTGTTATACGCTCTCCCAAAGGAATATCAAGGCCATCTGTGTTTCGTGACCATAGCTCCCAGGATGAATTGTCTGAGAATGGATCAGGAACTGTTGTTATTCGATCTCCGAAGGGATCAAAGCCATCAGTGTTTCGTGATCAGAGCTCTCAGTCCAGCAGCAGCTATGCTTCTTTTGAAGATACTTCTACTAGTGGAACCGTTGTTGTACGTAGCCAGCATGATGATTCTGATTCTCCACGGACTCCAAGATCCCGACTAGGACTTCATGACAGAAGTTCAAATGCTTCACTTGAAGACAGTGCTGCAAACCTAGCCGAGGCAAGGGCTGCTATCCAAGGAGGGTTAAGAAAAGTGAATGCTCGGGAGAGACATCCCCGAGGGAAAATCAATACCGATGTACAGGAAAGCAAAAGAGACCAAATGACCAGCAGCACTGATTCTTCCAGATCATATCGTGAATACATTGATGCACAAAGGGGCAATGTAAGATCGCATCATGCCAGTGATGATGAAGAGAGTGCTAGAACAATATCATCGTCAGCAACATTATCAAGTTTGCTTATTCCTTCATTAAAAGAGGCCGTTGCTGATGATCCAGAAGGGAAAATCGTGCGGGCAGTTATCAATTCTTTAGTAAACATGGAGGGAACAAAGCCTAGATCCTCTGACGTTCTTGTAAAACAATTGCTTCAGAGATTAGCAAGTTCGAACGAAGATTCATTGAAGGACCTGAAAGGACTGGCAAGCCAACTATTCAGCAAAGGCAAGACAACGGAAGAAACGCAAAATGCAGAGGCTGATAACCGAAGGAAACAGCATAACAAGGAACCTCATCCAAATAGCAACTTAAGCCCTCTTGCAAGATTTCTTCTATCAAGATGGCAAGGCCAAACCTCACGGGATCTAAACCATTCTTGA 2142 0.4295 MEDLAGLVEATGSRFTSLELIGQGSFGDVYKGFDRELNKEVAIKVIDLEESEDDIDDIQKEVSVLSQCRCPYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIAYILRDLLHAVDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNTDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSSCLKKVPAERLSAKELLKDRFIRNARKSTKLLERIRERPKFQLKEDLETPRNGSRGIGEGSDTMKVARDSRVEENNRPSSQGKTLKSSEWDFSIGESEGTGTFRNVSRPPQSRDKKTDVSYNQLTQKKAPDAGYQGGYANRIAANQSLDNQLEDDELSGSGTVVIRSPKGISRPSVFRDHSSQDELSENGSGTVVIRSPKGSKPSVFRDQSSQSSSSYASFEDTSTSGTVVVRSQHDDSDSPRTPRSRLGLHDRSSNASLEDSAANLAEARAAIQGGLRKVNARERHPRGKINTDVQESKRDQMTSSTDSSRSYREYIDAQRGNVRSHHASDDEESARTISSSATLSSLLIPSLKEAVADDPEGKIVRAVINSLVNMEGTKPRSSDVLVKQLLQRLASSNEDSLKDLKGLASQLFSKGKTTEETQNAEADNRRKQHNKEPHPNSNLSPLARFLLSRWQGQTSRDLNHS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06209 713 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06209 713 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06209 713 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06209 713 Coils Coil 48 68 - -
Vivi2g06209 713 MobiDBLite consensus disorder prediction 544 559 - -
Vivi2g06209 713 MobiDBLite consensus disorder prediction 481 495 - -
Vivi2g06209 713 MobiDBLite consensus disorder prediction 322 353 - -
Vivi2g06209 713 MobiDBLite consensus disorder prediction 523 587 - -
Vivi2g06209 713 Coils Coil 664 684 - -
Vivi2g06209 713 MobiDBLite consensus disorder prediction 560 581 - -
Vivi2g06209 713 FunFam serine/threonine-protein kinase dst1 isoform X1 12 300 - -
Vivi2g06209 713 MobiDBLite consensus disorder prediction 525 543 - -
Vivi2g06209 713 MobiDBLite consensus disorder prediction 431 480 - -
Vivi2g06209 713 MobiDBLite consensus disorder prediction 307 321 - -
Vivi2g06209 713 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vivi2g06209 713 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 11 662 - -
Vivi2g06209 713 MobiDBLite consensus disorder prediction 660 693 - -
Vivi2g06209 713 MobiDBLite consensus disorder prediction 398 507 - -
Vivi2g06209 713 CDD STKc_MST3_like 13 287 - -
Vivi2g06209 713 Gene3D Transferase(Phosphotransferase) domain 1 12 298 - -
Vivi2g06209 713 MobiDBLite consensus disorder prediction 288 365 - -
Vivi2g06209 713 MobiDBLite consensus disorder prediction 668 685 - -
Vivi2g06209 713 SUPERFAMILY Protein kinase-like (PK-like) 13 296 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06209 Vivi-Chr2 196560790 196573629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06209 1 710 MAP Kinase Kinase Kinase Kinase AT3G15220 60.302 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Vivi2g06209 Pkinase 1.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06209 K08838 - gmx:100815042 1087.02