Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06200 ATGGAGATGAACCAAACATCACTTGAGAAAGTGTGGGAATACAACATAGTTGAAGAAATACAAGATGAAGAAGAGAAAGAGGATGATGGTGTAGAAAAAGATGAGAAAAAGAAAGGTGTTTGTGTGAGTGGGAGAAAAGGGCCTAGTAAAGGAGGAAGATTTTCTCCACCTTCCTGTCAAGCAGAAACTTGTCAAGCTGATTTAACTTTTGCAAAGAGGTACCATCGTCGGCATAAGGTTTGTGAGGTTCATTCCAAGGCACCTGCTGTGGTGGTTGCTGGACTGAGCCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTTGCGGAGTTTGATGAAGCGAAAAGAAGTTGCCGTAGACGCTTAGCGAAACACAATGAACGACGTCGTAAAAGCACTGCCCGAACTTGCAATGAAGGAAGCAATACTGGTCAGCAACATGATGCTGGTGACTGGAGAAATATTCATATGAACATTACAGGGAGTTCTGGCCACGAGTATTTGAATTTCAGATGA 519 0.4355 MEMNQTSLEKVWEYNIVEEIQDEEEKEDDGVEKDEKKKGVCVSGRKGPSKGGRFSPPSCQAETCQADLTFAKRYHRRHKVCEVHSKAPAVVVAGLSQRFCQQCSRFHELAEFDEAKRSCRRRLAKHNERRRKSTARTCNEGSNTGQQHDAGDWRNIHMNITGSSGHEYLNFR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06200 172 SUPERFAMILY SBT domain 57 136 IPR036893 GO:0003677|GO:0005634
Vivi2g06200 172 Coils Coil 109 129 - -
Vivi2g06200 172 MobiDBLite consensus disorder prediction 23 58 - -
Vivi2g06200 172 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 137 IPR044817 GO:0003677
Vivi2g06200 172 MobiDBLite consensus disorder prediction 124 152 - -
Vivi2g06200 172 Pfam SBP domain 59 132 IPR004333 GO:0003677
Vivi2g06200 172 ProSiteProfiles Zinc finger SBP-type profile. 56 133 IPR004333 GO:0003677
Vivi2g06200 172 FunFam Squamosa promoter-binding-like protein 14 50 120 - -
Vivi2g06200 172 Gene3D - 50 120 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06200 Vivi-Chr2 196406129 196408381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06200 9 142 SBP-box Gene Family AT3G15270 52.985 2.71e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi2g06200 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06200 - - gmx:100815775 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06200 2 196406129 196408381 Vivi5g04076 5 136953271 136957477 ECH
Vivi2g06200 2 196406129 196408381 Vivi2g06200 2 196406129 196408381 ECH