Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06197 ATGGTGCTACCAAGATGTTTCTGGTTGACACTGTTTCAGTTTTGTGTCTTGTCTTCCTTACTTGGTTTATCTCTGAGTCTTGATAATAGAACTCAATCTTGTGATCCTAGTGATTTATCAGCTCTGAAAGAGTTTGCAGGAAACCTTACAAATGGTTCCATTGTCAAATTATGGTCCAATGATAGTGTTTGTTGCAAATGGCTTGGAGTTGTGTGTGGTGATAATAGAGTGACAAAATTGATCCTTTCTGAAATGAGTCTCAATGGAACAATTTCACCTTCCTTAGCAAAACTAGAGTATCTCACTGTGTTGAACCTTTCATTCAATCATCTAGAGGGTAAATTGCCTCAAGATTTGTCAAAATTGAAGCAGTTGAAGTTTCTTGATTTGAGCTATAACATGTTGACAGGACCTGTTTCTAAGTCACTTTCTGGTTTGCAATCCATTGAAGTGTTGAATGTTTCAAGTAATTCATTTTCTGAAGATTTCTTGTTTCAGTCTGTGGAGTTTACTCATCTTCTAGCTCTCAATGTGAGTAACAATTCATTCACTGGTAAATTCAGTTCTCAAATTTGCAATTCTTCAAAGGTTATTCACACACTTGATTTATCTTCGAACCGTTTCGATGGTGATCTTCAAGGTTTGAACAACTGCACTTTATCTCTCCAAAGGTTGCATTTGGATTCCAATTCATTTTCTGGCCATTTACCAGATTCATTGTATTCAATGTTAGCTTTGGAACAGTTATCACTCTCTGCCAACAATATTTCTGGCAAGTTAAGCAATGAGTTAAGCAAGCTTACTAGTCTAAAATCTCTTGTGGTTTCTGGGAACCGATTTTCAGGAGAAATCCCAAATGTTTTTAAGAATCTTTTGCAGTTGGAACATTTAGTAGCACATGCTAACTCATTTTCTGGACCATTACCTTCCACTTTGGCTTTGTGCTCTAAGCTTAGAGTTCTTGATCTTAAAAATAACTCTTTGTCGGGTCCACTCGATCTTAATTTCACCGGATTAACTCGGCTTTGTTCACTAGACCTTGCGAGTAATCATTTAACTGGTCCACTTCCCAGTTCCTTGTCTTACTGTCATGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAAATGGTTCTATACCGGAAAGTTATGCCGAATTATCTTCTCTTTTGTTTGTATCTTTTTCAAACAACAGCTTAGAGAATTTATCTGGTGCACTTTCTGTTCTTCAGAAATGCAAAAATCTCACAACTCTTATCCTTACCAAGAATTTCCACGGCGAGGAAATTCCACAAAATATACCAACTGGATTTCAGAGTCTTATGGTGCTAGCACTCGGAAACTGCGGTCTGAAAAATCATATTCCTTCTTGGCTATTGAAATGCAGGAAATTGGCGGTACTTGATTTGTCTTGGAACTCTTTGAATGGTAGTATTCCTTCATGGATCGGTGAAATGGACAGTTTGTTCTATTTGGATTTCTCAAATAATTCTCTCACGGGAGAAATACCGAAAAGCTTGACAGAGATGAAGGGACTCTTGTGCCCGAATTGTGGAAGACCAAATCTCGCTACGTATGCTTTCATTCCGCTCTTCGTAAAAAGAAACACCAGTGTTAGTGGTTTGCAATATAATCAAGCTTCGAGTTTCCCTCCTTCGATTTTATTGAGTAATAACATGTTAAATAGCAGCATATGGCCAGAAATCGGTAACTTGAAGGCACTTCATGTGTTGGATTTCAGCAGGAACAACATCAGTGGTAGTATTCCGAGTACTATTTCAGAGATGGAGAATCTGGAAACATTGGATTTGTCTTATAATGATCTATCAGGTACAATCCCTCCCTCATTTAACAACCTCACGTTCTTGTCGAAGTTTAGTGTGGCGCATAATCGCTTGCAAGGACCGATTCCGAGTGGAGGGCAGTTTTTAAGCTTCCCTAGTTCAAGCTTTGAGGGTAATTTGGGACTTTGTCGGGATGATGATATTGATAATGTCACTCCTTGCAAGATTGTTAACAATATGAGGCCCGGTTTGTCTTCTGGTTCATCGAGAAAATTTAGTAGGGGCAATGTTCTTGGCATAACAATCAGCATCGGGGTAGGTCTTGCTTTACTGCTCGCAATTATTGTGGTAAGAATGTCGAAGAGGGAAGAAGATAAAACTATCGGTAGCTTCGATGAAGAGATGAATAGTAGGCCACACAGGTTATCAGCTGAATCACTTGTTTCCTCCAAATTGGTGCTTTTTCAGAATGCAGACTGCAAGGATCTCACAGTTTCGGATTTGTTGAAAGCGACAAACAATTTCAACCAGACGAATATTGTTGGTTGTGGCGGATTCGGTCTTGTTTACAAGGCTTATCTTCCGAACGGCACAAAAGCGGCTGTCAAAAGGCTTTCTGGTGACTGCGGTCAGATGGAACGGGAATTCCAAGCCGAAGTTGAGGCTCTCTCTCGAGCTCAGCACAAGAATCTTGTTTCTCTTAAAGGTTATTGTCGCCACGGAAACGACAGGTTGCTAATTTACTCGTACATGGAAAACGGAAGCTTGGATTATTGGCTTCACGAGTGCGTGGATGAAACTTCAGCTCTCAAATGGGATATACGACTCAAGATTGCACAAGGCGCGGCGCGTGGATTAGCTTACTTGCACAAGGGGTGCGAACCGTTTGTAGTCCACCGTGACGTTAAATCGAGCAACATACTTTTGGATGATAAGTTCGAAGCTCATTTAGCCGATTTCGGTCTCTCAAGACTACTTCAGCCATACGATACTCACGTAACAACAGATTTAGTAGGAACTCTAGGTTACATTCCTCCAGAATATAGTCAGACACTGACAGCAACGTTCCGCGGCGATGTCTATAGTTTCGGCGTCGTTCTTCTCGAGCTTCTTACCGGTAGAAGGCCTGTGGAAGTCATAAAGGGTAAAAACTGCAGGAATCTGGTGTCTTGGGTTTATCAAATGAAGTATGAAAATAATGAGCAGGAGATTTTTGATAAAGCCATTTGGGAAAAGGAAAGGGAGAAACAACTATTGGAAGTGCTTTCCATTGCTTGTAAATGTATTGACCAAGATCCAAGGCAAAGACCTTCTATTGAAATGGTTGTTTCGTGGCTTGATGGTGTGAGTTTTGATGGCTCTCAACAATGA 3156 0.4021 MVLPRCFWLTLFQFCVLSSLLGLSLSLDNRTQSCDPSDLSALKEFAGNLTNGSIVKLWSNDSVCCKWLGVVCGDNRVTKLILSEMSLNGTISPSLAKLEYLTVLNLSFNHLEGKLPQDLSKLKQLKFLDLSYNMLTGPVSKSLSGLQSIEVLNVSSNSFSEDFLFQSVEFTHLLALNVSNNSFTGKFSSQICNSSKVIHTLDLSSNRFDGDLQGLNNCTLSLQRLHLDSNSFSGHLPDSLYSMLALEQLSLSANNISGKLSNELSKLTSLKSLVVSGNRFSGEIPNVFKNLLQLEHLVAHANSFSGPLPSTLALCSKLRVLDLKNNSLSGPLDLNFTGLTRLCSLDLASNHLTGPLPSSLSYCHELKVLSLARNGLNGSIPESYAELSSLLFVSFSNNSLENLSGALSVLQKCKNLTTLILTKNFHGEEIPQNIPTGFQSLMVLALGNCGLKNHIPSWLLKCRKLAVLDLSWNSLNGSIPSWIGEMDSLFYLDFSNNSLTGEIPKSLTEMKGLLCPNCGRPNLATYAFIPLFVKRNTSVSGLQYNQASSFPPSILLSNNMLNSSIWPEIGNLKALHVLDFSRNNISGSIPSTISEMENLETLDLSYNDLSGTIPPSFNNLTFLSKFSVAHNRLQGPIPSGGQFLSFPSSSFEGNLGLCRDDDIDNVTPCKIVNNMRPGLSSGSSRKFSRGNVLGITISIGVGLALLLAIIVVRMSKREEDKTIGSFDEEMNSRPHRLSAESLVSSKLVLFQNADCKDLTVSDLLKATNNFNQTNIVGCGGFGLVYKAYLPNGTKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYMENGSLDYWLHECVDETSALKWDIRLKIAQGAARGLAYLHKGCEPFVVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVYQMKYENNEQEIFDKAIWEKEREKQLLEVLSIACKCIDQDPRQRPSIEMVVSWLDGVSFDGSQQ 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06197 1051 Pfam Protein kinase domain 771 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06197 1051 FunFam Nuclear pore complex protein NUP107 35 188 - -
Vivi2g06197 1051 FunFam Phytosulfokine receptor 1 733 845 - -
Vivi2g06197 1051 CDD STKc_IRAK 776 1043 - -
Vivi2g06197 1051 SUPERFAMILY L domain-like 480 659 - -
Vivi2g06197 1051 SMART LRR_typ_2 596 619 IPR003591 -
Vivi2g06197 1051 SMART LRR_typ_2 339 363 IPR003591 -
Vivi2g06197 1051 SMART LRR_typ_2 572 595 IPR003591 -
Vivi2g06197 1051 SMART LRR_typ_2 98 121 IPR003591 -
Vivi2g06197 1051 SMART LRR_typ_2 387 410 IPR003591 -
Vivi2g06197 1051 SMART LRR_typ_2 122 145 IPR003591 -
Vivi2g06197 1051 SMART LRR_typ_2 267 290 IPR003591 -
Vivi2g06197 1051 FunFam Tyrosine-sulfated glycopeptide receptor 1 336 673 - -
Vivi2g06197 1051 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 237 332 - -
Vivi2g06197 1051 SUPERFAMILY Protein kinase-like (PK-like) 752 1041 IPR011009 -
Vivi2g06197 1051 PANTHER LEUCINE RICH REPEAT KINASE 2 276 1043 - -
Vivi2g06197 1051 Gene3D Ribonuclease Inhibitor 294 674 IPR032675 -
Vivi2g06197 1051 PRINTS Leucine-rich repeat signature 596 609 - -
Vivi2g06197 1051 PRINTS Leucine-rich repeat signature 125 138 - -
Vivi2g06197 1051 SUPERFAMILY L domain-like 57 258 - -
Vivi2g06197 1051 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Vivi2g06197 1051 Pfam Leucine rich repeat 221 280 IPR001611 GO:0005515
Vivi2g06197 1051 Pfam Leucine rich repeat 101 158 IPR001611 GO:0005515
Vivi2g06197 1051 Pfam Leucine rich repeat 574 633 IPR001611 GO:0005515
Vivi2g06197 1051 SMART serkin_6 770 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06197 1051 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672|GO:0006468
Vivi2g06197 1051 ProSitePatterns Protein kinases ATP-binding region signature. 776 798 IPR017441 GO:0005524
Vivi2g06197 1051 ProSiteProfiles Leucine-rich repeat profile. 598 620 IPR001611 GO:0005515
Vivi2g06197 1051 SUPERFAMILY L domain-like 199 519 - -
Vivi2g06197 1051 ProSiteProfiles Protein kinase domain profile. 770 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06197 1051 Gene3D Transferase(Phosphotransferase) domain 1 846 1047 - -
Vivi2g06197 1051 Gene3D Phosphorylase Kinase; domain 1 731 845 - -
Vivi2g06197 1051 SMART LRR_sd22_2 572 601 - -
Vivi2g06197 1051 SMART LRR_sd22_2 122 148 - -
Vivi2g06197 1051 SMART LRR_sd22_2 339 365 - -
Vivi2g06197 1051 SMART LRR_sd22_2 243 266 - -
Vivi2g06197 1051 FunFam Leucine-rich repeat receptor-like protein kinase 846 1051 - -
Vivi2g06197 1051 Gene3D Ribonuclease Inhibitor 33 293 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06197 Vivi-Chr2 196311230 196315601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06197 65 1047 Receptor kinase-like Gene Family AT1G55610 34.211 1.14e-162 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vivi2g06197 Pkinase 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06197 - - mtr:25487312 1791.16