Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06176 ATGGAGGATAATTCTGAGAATTCTAGGGCTTTGAATAGTTCTGGAGTTTCAGATAGGAATCAAAGGCAGAACCCTTTTTCCGGCGAGGGATCGGAGGATTCTAGGTTTAGAAAGGAAAGAGATTGGATTCATGGTGGACTACAGCTTGATCTAAATAAAAACCTAGGAGGGTTTTGTGAGGATGAAGTTGAGAATGACCGTTTCTTTTCTTCGGTAGAATGGGATGATATTAGCTTGAGGCAGTGGTTGGATAAACCCGATCGATCGGTTGATTTCTTCGAATGTTTGCATGTGTTTAGACAAATAGTAGAAATTGTTAATGCGGCGCATTGTCAAGGTGTTGTTGTTCATAACGTGAGGCCTTCGTGCTTTGTCATGTCGTCTTTCAACCATATCTCGTTTATTGAATCGGCTTCTTGTTCGGATACTGGTTCGGATTCTTTAGGAGATGGAATGAATGGCGAACAAGGCGGTGAGGCTAAAACTCCGACGTCTCACTGTCCTCGTGATATGATGCATCCGCAGAGTTTAGGTGGTGAAGATTTTTTGCCTGCCAAGAATTCGATGGCTGCTCGGTCTGATTCTAGTTGCATGCTGTCAAGCGCGGTGTATGCAGCTCGCGCGTCGTTAATAGAAGAAACAGAAGAGAATAAAATGAAAGATCGGAGGAAGGATGAAGAAGTGGAAGTAAAGAAGCAATCGTTTCCGATGAAACAAATACTGCAAATGGAGATGACTTGGTACACTAGTCCTGAAGAGGTTTCCGGTACCCCGAGTTCATGTGCTTCCGATGTTTACAGATTGGGGATTCTTTTATTCGAGCTATTCTGTCCGTTGAGCTCGAGAGAAGAGAAAAGTAGAACAATGTCTAGTCTTAGACATAGAGTTCTTCCACCGCAGTTACTTCTAAAATGGCCTAAGGAAGCTTCATTTTGCTTATGGTTACTACATCCGGACCCTAGCAGTCGTCCAACACTAGGTGAGTTGTTGCAGAGTGAGTTCCTTAATGAACAGCGTGACGATATGGAAGAACGTGAAGCAGCAATAGAGATTAGACAAAAGATAGAAGATCAGGAGTTGTTACACGAATTCCTTTCGTTACTTAAACAAAAAAAACAGGAAGTTGCTGAAAAATTGCAACACACTATCGCTTTTCTGTGTTCGGATATTGAAGAAGTGGCCAAGAAACAAACTAGGTTTAAAGAGATTTCCGGTGTTGAACTAGGGAGTGATGAACGTTCAGCATCAACTTTTCCGTCCATGACAGTTATCGATAGCGAAGATTCTGCGTGTTTAGGAACTAGAAAACGAGTCAGACTAGGTGTGCATGTTGATGAAAGCGACGATAACACAGGGAATGATCAGAAAAGTTCTGGAAGTTTTCTTTCAAAAAGTTCACGACTAATGAAAAACTTCAAGAAACTCGAGTCGGCGTACTTTTTAACACGATGCAAACCAACTTATTCCTCGGGGAGACAGGCGGTTAGACATTCATCTATAGCAAATGATGGGAGAGGGTCTGTTGTCATAAATGAACGAAGTAGCATCAATAGCCTGGCCATGAAAGAGAAAGGAAGAGACGGCGCAAGTGGTTGGATAAACCCTTTCCTCGAGGGTTTGTGCAAGTACTTATCTTTCAGTAAGGTCAAGGTAAAAGCTGACCTGAAGCAAGGCGATCTTTTGCATTCGTCCAACCTAGTATGCTCGCTCAGTTTTGATCGCGACGGAGAATTTTTCGCAACCGCCGGTGTGAATAAAAAAATCAAAATATTTGAATGTGATACAATCATAAACGAGGATCGTGATATCCACTATCCGGTAGTAGAGATGGCTTGCAGGTCAAAATTGAGCAGCTTATGTTGGAATACATACATCAAAAGTCAAATTGCTTCTAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTTACGAGAAGTCAAGTACTATCTGAAATGAGGGAGCACGAGCGGCGAGTGTGGTCGATTGATTTCTCATCAGCAGATCCAACGATGTTGGCAAGTGGAAGCGACGACGGTTGCGTTAAGCTATGGAGTATCAATCAGGCAAAATTCCATTTTCGCACTTGGTGGATGTCAAGCTTTGAAAACTAA 2112 0.4242 MEDNSENSRALNSSGVSDRNQRQNPFSGEGSEDSRFRKERDWIHGGLQLDLNKNLGGFCEDEVENDRFFSSVEWDDISLRQWLDKPDRSVDFFECLHVFRQIVEIVNAAHCQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGDGMNGEQGGEAKTPTSHCPRDMMHPQSLGGEDFLPAKNSMAARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEVKKQSFPMKQILQMEMTWYTSPEEVSGTPSSCASDVYRLGILLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIEIRQKIEDQELLHEFLSLLKQKKQEVAEKLQHTIAFLCSDIEEVAKKQTRFKEISGVELGSDERSASTFPSMTVIDSEDSACLGTRKRVRLGVHVDESDDNTGNDQKSSGSFLSKSSRLMKNFKKLESAYFLTRCKPTYSSGRQAVRHSSIANDGRGSVVINERSSINSLAMKEKGRDGASGWINPFLEGLCKYLSFSKVKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKIFECDTIINEDRDIHYPVVEMACRSKLSSLCWNTYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGCVKLWSINQAKFHFRTWWMSSFEN 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06176 703 Gene3D Transferase(Phosphotransferase) domain 1 75 348 - -
Vivi2g06176 703 SUPERFAMILY Protein kinase-like (PK-like) 65 337 IPR011009 -
Vivi2g06176 703 SUPERFAMILY WD40 repeat-like 564 688 IPR036322 GO:0005515
Vivi2g06176 703 MobiDBLite consensus disorder prediction 145 167 - -
Vivi2g06176 703 ProSiteProfiles Protein kinase domain profile. 1 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06176 703 Coils Coil 332 352 - -
Vivi2g06176 703 PANTHER PROTEIN SPA1-RELATED 2 38 689 IPR044630 GO:0009640
Vivi2g06176 703 Gene3D - 538 699 IPR015943 GO:0005515
Vivi2g06176 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 694 IPR001680 GO:0005515
Vivi2g06176 703 SMART serkin_6 16 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06176 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 687 - -
Vivi2g06176 703 MobiDBLite consensus disorder prediction 1 35 - -
Vivi2g06176 703 SMART WD40_4 645 685 IPR001680 GO:0005515
Vivi2g06176 703 SMART WD40_4 557 592 IPR001680 GO:0005515
Vivi2g06176 703 SMART WD40_4 606 642 IPR001680 GO:0005515
Vivi2g06176 703 MobiDBLite consensus disorder prediction 7 30 - -
Vivi2g06176 703 Pfam WD domain, G-beta repeat 648 685 IPR001680 GO:0005515
Vivi2g06176 703 Pfam WD domain, G-beta repeat 562 591 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06176 Vivi-Chr2 195874082 195877735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06176 562 686 Miscellaneous Gene Families AT5G08390 31.200 4.41e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Vivi2g06176 WD40 0.00019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06176 K26557 - gmx:100811457 1137.48