Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06142 ATGGATCAGATGACGGATTCGGATATGGATCAACAACGGCAAGGCTATTTTCATTCTGAACATTGTGTTCTCATGAGAGGCCCCAGCGTCGGACATCCTAATATCCGTTCGGTGGTGACTGCTTCAGGGAACACATCTAATGGCGATTCACACTTTTTACCAGATGCTTATGACAATGCTAGGGTGTATGGGATTACACAATACAACGGCGTTCAGCCTCAACATAATCTTGATATGGGCGTTGCAACTGCAGGCAACATATACTATTCTGGCATGAATCCTTCTTCAAGTACCGGTGTTTACCCGCTGCCTCATAGAGCCTCTGATCAGCTGCCGGGTTCAAGCACATTTGCGATCTCCGGAGTTTCCTTGGATAATTTCGGAAGAAGCAATGGTTTTGTAGATGACGGAAGAGGTCCGTACAAAAGGAAAATTGCTGAAGGGATAAGAGGAAACCACCAACATTTTAATGCCTCAACTAGTTCTTCTATTGCTCCCCCAAATGCAAGACACCCTGATGGGGTTGCTATGATGGATAATGCACCATTGCCATTCCGTGTCCCTTCGCTCATTGGAGTAGGGCCACACGGCGGTGCTTGGAGCAGGTCCGGCGAGTCTATTATGATGCATGATCATAATCATTTGATACACGGAAACTATTTGGGGCAGCACTTTCCACCAGCGGCTCCTCCTTGGTTGGACCAGCAAGTGAACAGTAATAGCAATGATGGCCACACTACAGCGTGGAATCCGCCTATTCCAATGCCTTATATACAAGCACCCACTATTAATGGAGGTTCATTAGAGAGTGCAAGTATGGGTTTGCAGAGGTATCACGACGCAGCCGGTAACCGAAATGTCCTGAGGTTTCCTCCTCCGCCTCCTCCTGTCAACCAACAGCACCCTAATTATCATCATCCAGCACTTCCCATGCCAGGAATAAGAGGTCACAATATCAGCTTTCACCCTCCGGTGACTGCAGCTTCATTTAGGGTTCCACCAAATCCTCCTCGCGGTTCTGTGATCCCTCCACCAACTGGTTTCGAGGCAGGTCCAAGGCATATTATCCCTGCCCCATCAACAGGGTTCCGGATATACCGACCTCATAGGCTCATGCCAGAGACAGCTCTCGCACATCGAAGTCTACCTCCCGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATCTGATTGACAATCACCGAGATATGCGCCTGGACATAGAGGACATGTCTTATGAGGATCTTCTTGCATTGGGCGAAAGGATTGGCAGTGTAAACACTGGCTTATCAGAGGAAACAATTGCGAATAAACTAAAGATGAAAGTTTATTCGCCCAAAGCCACTGCTATTAATCTGGAGGAGGTAGCTTCTGACGATCAAGAAACTGATTCTTGCATCATATGTCAGGAGGAGTTTAAGAACCAGGAGAGGATCGGCATTCTTCGATGTGAGCATGAGTATCACGTGGATTGCCTGACGAAGTGGTTGCTTGTGAAGAACGTCTGTCCCATATGCAAATCAGAAGCTTTGGCTACTGGAAGGAAGGATGCATAG 1572 0.4746 MDQMTDSDMDQQRQGYFHSEHCVLMRGPSVGHPNIRSVVTASGNTSNGDSHFLPDAYDNARVYGITQYNGVQPQHNLDMGVATAGNIYYSGMNPSSSTGVYPLPHRASDQLPGSSTFAISGVSLDNFGRSNGFVDDGRGPYKRKIAEGIRGNHQHFNASTSSSIAPPNARHPDGVAMMDNAPLPFRVPSLIGVGPHGGAWSRSGESIMMHDHNHLIHGNYLGQHFPPAAPPWLDQQVNSNSNDGHTTAWNPPIPMPYIQAPTINGGSLESASMGLQRYHDAAGNRNVLRFPPPPPPVNQQHPNYHHPALPMPGIRGHNISFHPPVTAASFRVPPNPPRGSVIPPPTGFEAGPRHIIPAPSTGFRIYRPHRLMPETALAHRSLPPVGFLQVDDVALIDEVGNLIDNHRDMRLDIEDMSYEDLLALGERIGSVNTGLSEETIANKLKMKVYSPKATAINLEEVASDDQETDSCIICQEEFKNQERIGILRCEHEYHVDCLTKWLLVKNVCPICKSEALATGRKDA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06142 523 FunFam E3 ubiquitin ligase BIG BROTHER 431 516 - -
Vivi2g06142 523 Pfam Ring finger domain 469 512 IPR001841 -
Vivi2g06142 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 98 516 IPR045191 GO:0061630
Vivi2g06142 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 516 IPR013083 -
Vivi2g06142 523 SUPERFAMILY RING/U-box 465 515 - -
Vivi2g06142 523 SMART ring_2 471 511 IPR001841 -
Vivi2g06142 523 CDD RING-H2_RNF24-like 469 515 - -
Vivi2g06142 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06142 Vivi-Chr2 195367986 195372039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06142 388 518 C3H Transcription Factor Family AT2G15530 45.985 5.49e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06142 K19041 - gmx:100800642 698.353