Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g06140 | ATGGATGATGATGAACGTGGTTCACGCAAAAGGATTAGAGGAAATCACCAACCTTCTAATCCTTTAGAAGGTTCTTCAAATTCTTCCCCTAATATTGAAGGAAACACTGATGAGGTCACTGTGAGGGACACATCAAGCTCACCAATGCAGCATCATGGCAACAACAATGGCGCCCGGGTTCCTCTTACGGCCCGTCAACATTTTCGGAGACCTGCTATCCTTGATGTTCCATCAAATCATTCAGATGGAGTCATGCCAGAGACATCTCTTAACCAGCAAAGGAATCTTGCTTTGATCGATGAAATGGAAAATTCATTGGAACGTAGACATGCGCGTTTGAATATTGATGGCATGGAGGATGCTTTGATTGATGAAGTGGAACATCTAATTGACCAACATCAACATTTAATCTCACTTATTGAAGAAATGTCCGATGAGGATTTTGCTTTATTTAATGAAATGGAACATCCTGTTGACCAACATCAAGATATGCGCTTGAATATTGATGGCATGTCTTATGAGGAACTTATTCAATTGGGTGAGAGGATTGGAAGTGTATCCACTGGTTTATCAGAAGAAACAATTGCTAGACAACTCAAAACTAAAGATTTTTCACCAAGTCCTATTGCTATTAACTTGGAGGAATTACCACCAGAAGAAGGAGACACTAATTCTTGCATTATATGCCAGGAGGAGTTTAAGAACCAGGAGAAGATTGGTGTTATCAAATGCGAGCACGAATATCATGTCGATTGCATAACACAGTGGTTGCTTTTGAAGAACAGCTGCCCAATCTGCAAAGTAGAAGCTTTAGAAGCTTTGAATGATGGATAG | 834 | 0.4017 | MDDDERGSRKRIRGNHQPSNPLEGSSNSSPNIEGNTDEVTVRDTSSSPMQHHGNNNGARVPLTARQHFRRPAILDVPSNHSDGVMPETSLNQQRNLALIDEMENSLERRHARLNIDGMEDALIDEVEHLIDQHQHLISLIEEMSDEDFALFNEMEHPVDQHQDMRLNIDGMSYEELIQLGERIGSVSTGLSEETIARQLKTKDFSPSPIAINLEELPPEEGDTNSCIICQEEFKNQEKIGVIKCEHEYHVDCITQWLLLKNSCPICKVEALEALNDG | 277 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g06140 | 277 | ProSiteProfiles | Zinc finger RING-type profile. | 226 | 267 | IPR001841 | - | |
Vivi2g06140 | 277 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 14 | 271 | IPR045191 | GO:0061630 | |
Vivi2g06140 | 277 | SMART | ring_2 | 226 | 266 | IPR001841 | - | |
Vivi2g06140 | 277 | Pfam | Ring finger domain | 224 | 267 | IPR001841 | - | |
Vivi2g06140 | 277 | MobiDBLite | consensus disorder prediction | 14 | 59 | - | - | |
Vivi2g06140 | 277 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Vivi2g06140 | 277 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 271 | IPR013083 | - | |
Vivi2g06140 | 277 | SUPERFAMILY | RING/U-box | 225 | 271 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g06140 | Vivi-Chr2 | 195339058 | 195345291 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g06140 | 98 | 272 | C3H Transcription Factor Family | AT2G15530 | 40.217 | 5.31e-36 | 134 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g06140 | K19041 | - | psat:127086275 | 367.851 |