Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06140 ATGGATGATGATGAACGTGGTTCACGCAAAAGGATTAGAGGAAATCACCAACCTTCTAATCCTTTAGAAGGTTCTTCAAATTCTTCCCCTAATATTGAAGGAAACACTGATGAGGTCACTGTGAGGGACACATCAAGCTCACCAATGCAGCATCATGGCAACAACAATGGCGCCCGGGTTCCTCTTACGGCCCGTCAACATTTTCGGAGACCTGCTATCCTTGATGTTCCATCAAATCATTCAGATGGAGTCATGCCAGAGACATCTCTTAACCAGCAAAGGAATCTTGCTTTGATCGATGAAATGGAAAATTCATTGGAACGTAGACATGCGCGTTTGAATATTGATGGCATGGAGGATGCTTTGATTGATGAAGTGGAACATCTAATTGACCAACATCAACATTTAATCTCACTTATTGAAGAAATGTCCGATGAGGATTTTGCTTTATTTAATGAAATGGAACATCCTGTTGACCAACATCAAGATATGCGCTTGAATATTGATGGCATGTCTTATGAGGAACTTATTCAATTGGGTGAGAGGATTGGAAGTGTATCCACTGGTTTATCAGAAGAAACAATTGCTAGACAACTCAAAACTAAAGATTTTTCACCAAGTCCTATTGCTATTAACTTGGAGGAATTACCACCAGAAGAAGGAGACACTAATTCTTGCATTATATGCCAGGAGGAGTTTAAGAACCAGGAGAAGATTGGTGTTATCAAATGCGAGCACGAATATCATGTCGATTGCATAACACAGTGGTTGCTTTTGAAGAACAGCTGCCCAATCTGCAAAGTAGAAGCTTTAGAAGCTTTGAATGATGGATAG 834 0.4017 MDDDERGSRKRIRGNHQPSNPLEGSSNSSPNIEGNTDEVTVRDTSSSPMQHHGNNNGARVPLTARQHFRRPAILDVPSNHSDGVMPETSLNQQRNLALIDEMENSLERRHARLNIDGMEDALIDEVEHLIDQHQHLISLIEEMSDEDFALFNEMEHPVDQHQDMRLNIDGMSYEELIQLGERIGSVSTGLSEETIARQLKTKDFSPSPIAINLEELPPEEGDTNSCIICQEEFKNQEKIGVIKCEHEYHVDCITQWLLLKNSCPICKVEALEALNDG 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06140 277 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Vivi2g06140 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 14 271 IPR045191 GO:0061630
Vivi2g06140 277 SMART ring_2 226 266 IPR001841 -
Vivi2g06140 277 Pfam Ring finger domain 224 267 IPR001841 -
Vivi2g06140 277 MobiDBLite consensus disorder prediction 14 59 - -
Vivi2g06140 277 MobiDBLite consensus disorder prediction 1 59 - -
Vivi2g06140 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 271 IPR013083 -
Vivi2g06140 277 SUPERFAMILY RING/U-box 225 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06140 Vivi-Chr2 195339058 195345291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06140 98 272 C3H Transcription Factor Family AT2G15530 40.217 5.31e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06140 K19041 - psat:127086275 367.851