Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06139 ATGGCACCAAGAGACATTAGGATTATGGATGATGGTAATGGACCACACAAAAGAATTAGGACAAACCACTATTCTTCTATTTCTCCCTATAATAGGAAACGCATTGTGAAGGCAGAGTATATATTGAGAGCAGCAGGTTTACAGAAATTGCGTCCTAACAGTTGTCGAGTTATGCATGCGGAAAAAGATGAAGATGAAATAACTTATGAGGAACTTTTTGATTTGGCTGAACAAATTGGCAATGCATGCACTGGTTTATCAATGAAAACAATTGAGACTCAATTGAAGACCAAAGTTTATACAACAAACCCAGTGGCTATTGCTTTGGAGAAGTCACAATCTGATGATCAAAAAATTGACTCATGCATAATATGTCATGACAAGTTTACTAATCAAGAAGAGATTGCAATTCTTCAATGTGAGCATGAATTTCACATTGATTGCATAACAAAGTGTCTTATTTTGAGGAACAAATGCCCAAACTGCAAATCAGAAGCCCTAACTTCTCAAGACAAGGATGCATAG 525 0.3638 MAPRDIRIMDDGNGPHKRIRTNHYSSISPYNRKRIVKAEYILRAAGLQKLRPNSCRVMHAEKDEDEITYEELFDLAEQIGNACTGLSMKTIETQLKTKVYTTNPVAIALEKSQSDDQKIDSCIICHDKFTNQEEIAILQCEHEFHIDCITKCLILRNKCPNCKSEALTSQDKDA 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06139 174 SMART ring_2 122 162 IPR001841 -
Vivi2g06139 174 Pfam Ring finger domain 120 163 IPR001841 -
Vivi2g06139 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 63 167 IPR045191 GO:0061630
Vivi2g06139 174 SUPERFAMILY RING/U-box 121 167 - -
Vivi2g06139 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 167 IPR013083 -
Vivi2g06139 174 ProSiteProfiles Zinc finger RING-type profile. 122 163 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06139 Vivi-Chr2 195332431 195333921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06139 63 169 C3H Transcription Factor Family AT2G15530 37.963 4.60e-21 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06139 - K19041 vvo:131653450 358.992