Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06133 ATGGCGAAAACGAGGCCTGGAAAAAAAGACATGGACTCATACACCATCAGAGGAACCAACAAGCTTGTTAAAGCTGGTGATTGTGTTTTGATGCGTCCTTCTGACACGAGTAAGCCACCATACGTGGCACGTGTGGAGAAGATCGAGCAAGATAATAGGAGCAATGTGAGGGTTCGTGTGAGATGGTATTATAGGCCAGAAGAATCTCTTGGTGGAAGAAGACAGTTTCATGGAGCAAAGGAACTGTTTTTATCTGACCATTTTGATGTTCAGAGTGCTCACACTATTGAAGGGAAGTGTATTGTTCACTCTTTCAAGAACTATACTAAGCTTGAGAATGTAGGCGCTGAAGATTATTATTGTAGGTTTGAGTATAAGGCTGCTACCGGTGCTTTCACGCCTGACCGTGTTGCTGTATACTGCAAATGTGAGATGCCTTATAATCCGGATGACCTAATGGTGCAGTGCGAGGGGTGCAAAGATTGGTACCATCCGGCTTGTGTGGGCATGACTATTGAAGAAGCGAAGAAGTTGGACCATTTTGTTTGTTCCGAATGCTCATCTGATGATGATATGAAGAAACCCTTGGCGCCATTTCCTTCATCACCGGGATCTGATGGCAAGGTATGGTAA 633 0.4455 MAKTRPGKKDMDSYTIRGTNKLVKAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVRVRVRWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPLAPFPSSPGSDGKVW 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06133 210 FunFam Chromatin remodeling protein EBS 1 132 - -
Vivi2g06133 210 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Vivi2g06133 210 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Vivi2g06133 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 197 IPR013083 -
Vivi2g06133 210 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Vivi2g06133 210 SMART PHD_3 140 187 IPR001965 -
Vivi2g06133 210 Pfam BAH domain 23 135 IPR001025 GO:0003682
Vivi2g06133 210 Pfam PHD-finger 140 188 IPR019787 -
Vivi2g06133 210 PANTHER OS08G0421900 PROTEIN 1 206 - -
Vivi2g06133 210 CDD BAH_BAHCC1 26 156 - -
Vivi2g06133 210 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Vivi2g06133 210 SMART BAH_4 21 136 IPR001025 GO:0003682
Vivi2g06133 210 MobiDBLite consensus disorder prediction 187 210 - -
Vivi2g06133 210 Gene3D - 2 132 IPR043151 -
Vivi2g06133 210 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06133 Vivi-Chr2 195113368 195115929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06133 31 138 Core DNA Replication Machinery Family AT4G14700 31.193 5.06e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi2g06133 BAH 1.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06133 K25868 - gmx:100800993 430.639