Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06117 ATGATTATGAACGGAGTGTGCAGTCTCCGCTCGTGCCTCCGTCTCCCGGAGCATCAAATATTTCGTGCAGCCCCACTCTCCTACCATTTCCGGCGCCGGTTTCTCGTCACCGCATCATTATCGGAGAAAAATAAAGAGAAGGTGATAGTTATTTCTGGACCCACCGGTTCCGGCAAAAGCCGTCTCGCATTGGAACTTGCAAAGCGCCTCAATGGAGAAATCGTCAGTGCCGATTCCGTTCAGGTGTATCGGGGTCTTGATGTTGGATCTGCAAAGCCTTCCTTAATAGATAGAAAGGAAGTGCCGCATCATCTGGTTGACATACTTCACCCATCTGAAGATTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCGACAAGATCTATTCTTGACAATGGCCGCGTTCCTATAGTTGTTGGGGGCACTGGACTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTGCCTAAATCCTCTACAGAGATAACATCTCAAGTAAGTATAGAGTTAGCTGAATTACAGAGAAATGACGACTGGGATGCTGCTGTTCAGTTGGTGGTAAAAGCAGGTGATCCAAAGGTCCAACATATAGCAGTGAATAATTGGTACAAATTACAGCGTAGTCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCTTTTCGGGTACCATATGATTCTTTCAGGAAACAGGGTGATTCTAGAGTTGCTGATGGATCTGATTCATCTGATACAAACACTAATTATGATGCAACGAAAGAATCTGATACAGCAAAATTAGACTACGATTTCATGTGTTTTTTCCTTTCAAGTGACAGAGTTGACCTCTACAAATCACTCGATTATCGGTGTGAAGATATGTTATTAGGAGGGGATAGCATTTTGTCTGAGGCTCAATGGCTTCTTGATACCGGTCTTCAACCTAACTCCAACTCTGCAACAAGAGCAATTGGCTACAGACAAGCCACGGAGTACTTACTAGGATGCAGAGAACAAGGGGGTGAGAGTTCAGCCAGAGAATTTTACAGATTTTTGTCTGAATTTCAAACAGCATCACGGAATTTCGCAAAAAGGCAGTTGACTTGGTTTCGAAATGAGCGTATATACCATTGGCTTGATGCCTCTAAACCTCTGGTATAA 1152 0.4349 MIMNGVCSLRSCLRLPEHQIFRAAPLSYHFRRRFLVTASLSEKNKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSLIDRKEVPHHLVDILHPSEDYSVGQFFEDARQATRSILDNGRVPIVVGGTGLYLRWFIYGKPDVPKSSTEITSQVSIELAELQRNDDWDAAVQLVVKAGDPKVQHIAVNNWYKLQRSLEIIKSSGSPPSAFRVPYDSFRKQGDSRVADGSDSSDTNTNYDATKESDTAKLDYDFMCFFLSSDRVDLYKSLDYRCEDMLLGGDSILSEAQWLLDTGLQPNSNSATRAIGYRQATEYLLGCREQGGESSAREFYRFLSEFQTASRNFAKRQLTWFRNERIYHWLDASKPLV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06117 383 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 45 374 IPR039657 -
Vivi2g06117 383 Gene3D - 157 227 - -
Vivi2g06117 383 MobiDBLite consensus disorder prediction 236 255 - -
Vivi2g06117 383 Hamap tRNA dimethylallyltransferase [miaA]. 48 380 IPR018022 GO:0008033
Vivi2g06117 383 FunFam tRNA dimethylallyltransferase 9 156 227 - -
Vivi2g06117 383 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 48 225 IPR018022 GO:0008033
Vivi2g06117 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 176 IPR027417 -
Vivi2g06117 383 Gene3D - 45 382 IPR027417 -
Vivi2g06117 383 Pfam IPP transferase 81 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06117 Vivi-Chr2 194864736 194871224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06117 51 225 C2H2 Transcription Factor Family AT2G27760 28.962 9.92e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06117 K00791 - gmx:100808814 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06117 2 194864736 194871224 Vivi2g06117 2 194864736 194871224 ECH