Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06116 ATGATTATGAACGGAGTGTGCAGTCTCCGCTCGTGCCTCCGTCTCCCGGAGCATCAAATATTTCGTGCAGCCCCACTCTCCTACCATTTCCGGCGCCGGTTTCTCGTCACCGCATCATTATCGGAGAAAAATAAAGAGAAGGTGATAGTTATTTCTGGACCCACCGGTTCCGGCAAAAGCCGTCTCGCATTGGAACTTGCAAAGCGCCTCAATGGAGAAATCGTCAGTGCCGATTCCGTTCAGGTGTATCGGGGTCTTGATGTTGGATCTGCAAAGCCTTCCTTAATAGATAGAAAGGAAGTGCCGCATCATCTGGTTGACATACTTCACCCATCTGAAGATTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCGACAAGATCTATTCTTGACAATGGCCGCGTTCCTATAGTTGTTGGGGGCACTGGACTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTGCCTAAATCCTCTACAGAGATAACATCTCAAGTAAGTATAGAGTTAGCTGAATTACAGAGAAATGACGACTGGGATGCTGCTGTTCAGTTGGTGGTAAAAGCAGGTGATCCAAAGGTCCAACATATAGCAGTGAATAATTGGTACAAATTACAGCGTAGTCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCTTTTCGGGTACCATATGATTCTTTCAGGAAACAGGGTGATTCTAGAGTTGCTGATGGATCTGATTCATCTGATACAAACACTAATTATGATGCAACGAAAGAATCTGATACAGCAAAATTAGACTACGATTTCATGTGTTTTTTCCTTTCAAGTGACAGAGTTGACCTCTACAAATCACTCGATTATCGGTGTGAAGATATGTTATTAGGAGGGGATAGCATTTTGTCTGAGGCTCAATGGCTTCTTGATACCGGTCTTCAACCTAACTCCAACTCTGCAACAAGAGCAATTGGCTACAGACAAGCCACGGAGTACTTACTAGGATGCAGAGAACAAGGGGGTGAGAGTTCAGCCAGAGAATTTTACAGATTTTTGTCTGAATTTCAAACAGCATCACGGAATTTCGCAAAAAGGCAGTTGACTTGGTTTCGAAATGAGCGTATATACCATTGGCTTGATGCCTCTAAACCTCTGGAAACCGTTCTCAACTTCATTCATGATGCATACCATGATCAGAATGGAAGTCTTTTTGTGCCTGAACACCTTAGAATGTCAAGAGATATTTCTAATACCCGAATAGCTGGTAAACTAAAGACTTACTGCACGAAAAATAAGCATTTTGTGACCGGGGAAGATTGTTATCCTATTTTAGAATGGATAAAGAAGACCCAAAAGTGA 1350 0.4259 MIMNGVCSLRSCLRLPEHQIFRAAPLSYHFRRRFLVTASLSEKNKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSLIDRKEVPHHLVDILHPSEDYSVGQFFEDARQATRSILDNGRVPIVVGGTGLYLRWFIYGKPDVPKSSTEITSQVSIELAELQRNDDWDAAVQLVVKAGDPKVQHIAVNNWYKLQRSLEIIKSSGSPPSAFRVPYDSFRKQGDSRVADGSDSSDTNTNYDATKESDTAKLDYDFMCFFLSSDRVDLYKSLDYRCEDMLLGGDSILSEAQWLLDTGLQPNSNSATRAIGYRQATEYLLGCREQGGESSAREFYRFLSEFQTASRNFAKRQLTWFRNERIYHWLDASKPLETVLNFIHDAYHDQNGSLFVPEHLRMSRDISNTRIAGKLKTYCTKNKHFVTGEDCYPILEWIKKTQK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06116 449 Pfam IPP transferase 81 370 - -
Vivi2g06116 449 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 48 225 IPR018022 GO:0008033
Vivi2g06116 449 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 45 381 IPR039657 -
Vivi2g06116 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 176 IPR027417 -
Vivi2g06116 449 MobiDBLite consensus disorder prediction 236 255 - -
Vivi2g06116 449 Hamap tRNA dimethylallyltransferase [miaA]. 48 387 IPR018022 GO:0008033
Vivi2g06116 449 Gene3D - 45 416 IPR027417 -
Vivi2g06116 449 Gene3D - 157 227 - -
Vivi2g06116 449 FunFam tRNA dimethylallyltransferase 9 156 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06116 Vivi-Chr2 194864736 194872269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06116 51 225 C2H2 Transcription Factor Family AT2G27760 28.962 1.64e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06116 K00791 - gmx:100808814 709.909