Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06114 ATGCACACAAACACAACAATGGAACCATCATTCAAGTCCATCACATGCACTAGAAAAGGTTCGTATAAATTAGAAACCAGAAACTTATCATACAAATTGTGCAGCAAATTTGATGAATTTAGAACTCTTTGTTTCGGTTTGAATCCTACGAGAGGTTCGAAGTTTATTTTGAAGGATGTTAACTGTGAAGCAAGGCCGGCGGAGATTACTGCTATTGCTGGTCCTAGTGGAGCTGGAAAAACTACACTGCTTGAGATTCTTGCTGGGAGAATACCCTCGTGTAAAGTTTCTGGACAAGTACTTGTCAATCACATGCCTATGGATGTGAACAGATTCAGACGAGAATCCGGGCACGTCGCGCAAGAAGATGCTTTGTTTCCGTTGCTTACGGTTAGGGAGACGCTCATGTATAGTGCTTTGTTGAGGCTTCCCGGCGGGCGAAAAGTGGCTGCAACGAGAGTTGCAGAGTTGATGAAGGAGCTCGGGTTGGATCCTATTGCAGATTCAAGAATCGGCAATGGATCAGACCATGGTATATCGGGCGGGGAAAGGCGTAGAGTTTCCATTGGTGTCGACTTAGTTCACGACCCTGCAATTATTTTGATTGATGAACCAACTTCAGGTTTGGATTCAGCATCAGCTCTTAATGTAATCTCGATGCTTAGACTAATGGCGTTTAATCAAGGCAAGACAGTTGTTTTAACTATCCACCAACCCGGTTTTCGAATCTTAGAGCAACTTGATAGCCTCATTTTGCTATCTGATGGATTTGTCACACATAGTGGTTCACTGAATCTTCTCGAGGCAAGGCTCAGTTTATCCGGTCATCGCATTCCTCACCATGTCAATGTCCTAGAATTTGTTCTTGATGTCATGCAAACCTTGGTTATACGTACTTCAGAATCCGGCCGGAACAATCAATTTCTTCTCAATGATGAAAAGGAGAACCAAGATCACAAGATGAGATTGCAGTGCTCTATGATTGTCAAAGAAAAGGCTATGCTGTACTCAAATTCTCCAATGGAGGAGATTTTAATCCTAGGTCAAAGATTTTGCAGCAACATTTTCAGAACCAAGCAACTCTTTGTTACAAGGGTCATACAAGCCTTAGTAGCTGGATTTGTATTGGGGACCATATTCTTGAACGTTAGCAACAAACAAACTAAAATAGCATTACAAACGCGAAGCGGCTTCTTCGCTTTCAGCCTTACCTTTTTGTTATCATCAACAACAGAAGGTCTGCCTATTTTCTTAGAGGAGAGAACAACATTCATGAGAGAGACCTCAAGAGGAGCTTATCGTGTTTCTTCATATGTTTTAGCAAATACACTTGTGTTTCTTCCTTTTCTTCTAATGGTTGGTCTTCTGTACACAACTCCTGTTTATTGGCTGGTAGGATTAAGAAAAGACATCGACGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTCCTATTAATGTCGAATTCTCTAGTAGCTTGTTTCAGCGCCCTAGTCCCGAATTTCATTCTCGGAAGCTCGTTAATTGCTGGTCTAATGGGGTCTTTCTTTCTATTCTCAGGCTATTTCATATCAAAGGAAAAAATACCTAGTTACTGGATTTTTATGCACTATATAAGTCTATTCAAGTATCCATTTGAGTGCCTTATGATAAATGAGTATGGAGGCGAGCAAGGGAAAAAGAGATGCATAGAAGTTAACAACAATGGGGAATGCATATTATATGGAGTTGAGTTCTTAAGTCAACAAGGTCTGAAAGAGTCACAGAAATGGTCCAATTTGGGTTTAATGTTAAGCTTCATAATAGGGTATAGAGTGCTTAACTTTATAATTCTTTGGCTTAGATGTTACAGAAGCAGAAAATAA 1866 0.4051 MHTNTTMEPSFKSITCTRKGSYKLETRNLSYKLCSKFDEFRTLCFGLNPTRGSKFILKDVNCEARPAEITAIAGPSGAGKTTLLEILAGRIPSCKVSGQVLVNHMPMDVNRFRRESGHVAQEDALFPLLTVRETLMYSALLRLPGGRKVAATRVAELMKELGLDPIADSRIGNGSDHGISGGERRRVSIGVDLVHDPAIILIDEPTSGLDSASALNVISMLRLMAFNQGKTVVLTIHQPGFRILEQLDSLILLSDGFVTHSGSLNLLEARLSLSGHRIPHHVNVLEFVLDVMQTLVIRTSESGRNNQFLLNDEKENQDHKMRLQCSMIVKEKAMLYSNSPMEEILILGQRFCSNIFRTKQLFVTRVIQALVAGFVLGTIFLNVSNKQTKIALQTRSGFFAFSLTFLLSSTTEGLPIFLEERTTFMRETSRGAYRVSSYVLANTLVFLPFLLMVGLLYTTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGSSLIAGLMGSFFLFSGYFISKEKIPSYWIFMHYISLFKYPFECLMINEYGGEQGKKRCIEVNNNGECILYGVEFLSQQGLKESQKWSNLGLMLSFIIGYRVLNFIILWLRCYRSRK 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06114 621 Gene3D - 30 278 IPR027417 -
Vivi2g06114 621 Pfam ABC-2 type transporter 343 554 IPR013525 GO:0016020|GO:0140359
Vivi2g06114 621 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 20 606 - -
Vivi2g06114 621 FunFam ABC transporter G family member 10 41 286 - -
Vivi2g06114 621 Pfam ABC transporter 57 207 IPR003439 GO:0005524
Vivi2g06114 621 SMART AAA_5 66 257 IPR003593 GO:0016887
Vivi2g06114 621 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524|GO:0016887
Vivi2g06114 621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 24 280 IPR003439 GO:0005524
Vivi2g06114 621 CDD ABCG_EPDR 24 262 - -
Vivi2g06114 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 268 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06114 Vivi-Chr2 194841928 194844055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06114 49 267 Calmodulin-binding Proteins AT2G36910 30.837 1.13e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06114 K05681 - gmx:100776372 1011.13