Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06110 ATGGATCATTTGTGCGATGATAACTTTGAAGGATCTAAGGAAGAAAGACAGATTTTTACAGAGGTCTTTTTTGGTGAATGCACTTTTCAGTCTAGTCAGAGGCGTGTTGTTTCTGGAGCCATCAACCTTGAACATGAATCCACAATCAACACATTCAAATCATTTGGCTCTAGTAATGAAAACTCGATCTTATTGCGTCCCTCGTCATCAAGATTTACACACCATGAGGAGGACATTAATGTAAGTCAGCATTCCAATGAGACTGCCCTGGGGTGCATGCCAGAGAGTTTAACTTGTGAAGACCTGAATGATGAGATTGTAAATGTTAAACGTATGAAGTTTTCTCTACATGAACTTCCTTGTAGTAGATCTAATTCAGAAGATGTTCTGGGTTCTTCGGGAATTCTGAAAGAAGTAATTTCCTTCCCGCCTTGTGCTGCTACAGACTGTGATAGTGACTCAATTGCATTTCGGACAGTTGAATCATCTAAACATGGCGTAGTATCTAGTTGCTGTCTGTTGAAGCATAACTTGGTACAGAATAAACATGCTTCGAATAATGATGTAGATGTTACAAACTGTAAATCTGAATCTGCAAATGGGAACATCACAAAAGAAATGTCTGCAAATAAGGTAGTTGCTTCTCCTGTATCCCAGGAGAGCTCGGCAAACAGGCTAGCTGTAACGAGTTCATCAATCACTGTTGTGAAGAAGTCTTCCTTTCCTTTAAAAACTGAGGAAATGGCAGAAGGGTTTCAATCTTCTAATATGATTATCTCAAATTCAGTGTCAAAGCTAGACAAAGAGGATCCCCGTTTCATACTGCAGTTTCACATTGTGCAGTTGCTTACGTTGTCAGGCTGGTCTATTGGGAAACATCAGCGGCCTTGTAGGCGGTGGATGGAGTCATTCTACAAGACACCAAAGGGAAAAACTATTAGGGAATTTACTAAAGTTTGGAGATTATGTGGCCATCTTTTGTCTGTTGAAAAATGCAAAGTACCATATGAAGGCCGTAAGGAATGGGCGGGTATTAGTGATTTCTGGTCTGATCTATTGAGTACTCTAAAAAATGTTGATAAATCAAAAACCCAGTCAGAAACGACAGCTATGTTGGCTTATCAATGGTGGCTTTTGGATCCTTTTGTAGTAGTCATATATTTCGATAGAAAGATCGGTGCTCTGAAAAAGGGAGAGGTAATAAAAGCATCTAGTAGTTTAGTTTCTAGTAAGGGTAAAATGGCATATGATCCAGTTGATTCAGCATGGGAAGATAGTTCTCGTGCTCATTCTGATCAAAAGCACGGCCAAGCCGTTTTATGTGACTCTTCAACAGCAACTGGAGCCACTAAAATATCTGCTTTAGTGATAAACAATCATGCTTGTAATCAGAAATCTGGTGGCAATCAAGAAGATATGCATGTTGGAGAACACAAACCTAACGTCATTGAAAATCGATGTAGGGAAATGTCAGTGAGCAAAAGTAGCATGGATCTAGTGTCCTTACCTGCTTGTGCATTGGGCAGCACTGTTACCCAATCAAATGCTTCCTCTTTCAATGCTCTTCCAAGCTCAGGAAATTTGGACTTGGATTCTAAAGTGAATGCTGTTCATCAAGATAAACATAGAGATTCCAAAAACATTGATAAGTATACATCAGATAATCGGTCTGAATATAGTGAAGAGGGGAGGAAAATCTCAGTGGCTTCTGTATTTGGGAAAGATAGTACATGGTCCTCATCTAATGGTATTCTTAAAAAGAAAACGCGGAGGAAGTGCAAAAGGATATCTCAAATCAAACTGAGTATGTTATACCATAGTGACATACTGGGATCAACTATCACTGACCAGGTGCAGTCATTGAATGGTGATGCATGTGGCGCTCAAGCTGGTTTGAAAGAAGTTCAGAATTATGTAGTTGACAGTATGGGAAAAAAAAGGAACTGCAAGAAGTTATTGGGCACTGCAAACCAGCGACATATTAGGAAAGCAAATAAGTCCAAGAGGTGCCATATTGAAGACGATGATCTATTAGTGTCAGCAATATTCAAGAATAAGGACTTCAACCCAAAGACAATCCGAGGCAATTCTAGAGCTAAACCTGGCAAGTCAAGGGGTTTGAGAAAGCTTAAAAGCCATAAAGGTCGCTGTAGGTTGCTACCAATGAACCCTTGTTATGGAGGGAAGCACAATAAGGATGGGAAGAAGTATTATCTTGGGGAAAGGACTCTCTTGTCCTGGTTGATTGAGAATAGGGTCATATCTTTAAATGATATCATTCAATATCGAAACCCTAAAGATAATTCTGTCACTAAGGATGGTAAAATCACTAAAGACGGTATTGTTTGTAAGTGTTGCAGTAAAGTGCTTACATTATCAGAGTTCAAGAATCATGCTGGGTTTACAGTGAGTCGCCCTTGCTTGAATCTTTTCATGGAATCTGGTGAGCCCTTTACACTTTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAACCAGGAAAAGTCAAAATCAAACTGCAAATGTCGTTGATAATGACAGAAATGATGACTCGTGCGGGTTGTGTGGTGAGGGAGGTGAGCTGATATGTTGTGATAACTGCCCTTCTACTTTTCACCTGACTTGTTTGTCCGTTCAGGAGATCCCTGAAGGCAACTGGTACTGCATAAACTGCACTTGTCGGATTTGTGGAAATTTGGTCATTGATAAAGAGGCTTCAGATACACATGATTCATTACAATGTTCTCAATGCGAACAAAAATATCATGAGAAATGCATAGGAGAAGGAGCTAACCAAGAAGGAGCAGTTTCAGACACTTGGTTTTGTAGTCAGAGTTGTCAAGAGGTATACTCTAGTCTCCAATCTCAAGTGGGGCTAGTTAATCAAGTTGCCAATGGCTTTTCATGGACGCTTCTAAGATGCATACACGATGATCAAAAGGTTCATTCTGCTCAGTGGTTATCCCTAAAGGCAGTATGCAATACAAAACTAGCTGTTGCCCTTACCATCATGGAGGAATGTTTTGTGTCAATGTTAGATCTAAGAACAGGCATCCACATGATACCCCAAGTTTTATACAATTGGGGGTCTGATTTTGCTCGCCTGAATTTTCAAGGGTTTTACACCATGGTGTTGGAGAAACAAGATGTATTAATATCTGTAGCATCTATCAGAGTGCATGGGACTACAGCTGCTGAGATGCCTCTAATTGCAACTTGCAGTCGGTATCGTCGCCAAGGAATGTGTCGACTCCTTGTGAACTCAATTGAAGAGATGTTAATATCTGTCAAGGTAGAAAAGCTTGTGGTATCAGCCATTCCTGATTTGGTGGAGACATGGACTAAGGGCTTTGGATTCGTACCTGTAGGTGACATTGAAAAGCGGAGATTAAAAAAGCTCAATTTAATGGTTTTTCCTGGAACAGTATTACTTGAAAAATCCTTGTATGGCAAGAAGAAAAATGAAGGACTGCATGATCAATCAATAGCATCAGATGAATTGTTTGTAGAAATCTGTTCTGAAGGAATGACCATAGCCGAATCATTGCCTCAAGATTTTGGGTATGTAACTACTACCAATGAAGTTGGTGCTAAGTCAGAATATGAACCTGTGGACTGCCAAAATCAACCAGGCAATAGGACTGACAGTGAAACCAACAAAGTTGATAATAATCAAGCAGTTGAAATCATCCCCTTTGAAGGAAACAATGTGCAGGAATTGATAACAAGCAACAGAATGCAAATTGAGAACTGTTTTGCTAACAAAGATGGTACTGAATCAGGTGTAGGACTTATTGAGGACAAGAATATCAAATTAGACAAAGATGGTACTGAATCAGGTGTAGGACTTATTGAGGACAAGAATATCAAATTAGACAAAGTTGAGGAAAATGATTTGCATGAACATGTTTCAAATATGTCATGCAAAACATTTTCCGGCAACAATTTTGACACAGTTTCTAATTTTGAATGCTCAGTGATGTATGATGAAACAGCTAATTTTGGAACATTAGCAAACTCTGCAAAATCAATGGAAAGTTGA 4041 0.3947 MDHLCDDNFEGSKEERQIFTEVFFGECTFQSSQRRVVSGAINLEHESTINTFKSFGSSNENSILLRPSSSRFTHHEEDINVSQHSNETALGCMPESLTCEDLNDEIVNVKRMKFSLHELPCSRSNSEDVLGSSGILKEVISFPPCAATDCDSDSIAFRTVESSKHGVVSSCCLLKHNLVQNKHASNNDVDVTNCKSESANGNITKEMSANKVVASPVSQESSANRLAVTSSSITVVKKSSFPLKTEEMAEGFQSSNMIISNSVSKLDKEDPRFILQFHIVQLLTLSGWSIGKHQRPCRRWMESFYKTPKGKTIREFTKVWRLCGHLLSVEKCKVPYEGRKEWAGISDFWSDLLSTLKNVDKSKTQSETTAMLAYQWWLLDPFVVVIYFDRKIGALKKGEVIKASSSLVSSKGKMAYDPVDSAWEDSSRAHSDQKHGQAVLCDSSTATGATKISALVINNHACNQKSGGNQEDMHVGEHKPNVIENRCREMSVSKSSMDLVSLPACALGSTVTQSNASSFNALPSSGNLDLDSKVNAVHQDKHRDSKNIDKYTSDNRSEYSEEGRKISVASVFGKDSTWSSSNGILKKKTRRKCKRISQIKLSMLYHSDILGSTITDQVQSLNGDACGAQAGLKEVQNYVVDSMGKKRNCKKLLGTANQRHIRKANKSKRCHIEDDDLLVSAIFKNKDFNPKTIRGNSRAKPGKSRGLRKLKSHKGRCRLLPMNPCYGGKHNKDGKKYYLGERTLLSWLIENRVISLNDIIQYRNPKDNSVTKDGKITKDGIVCKCCSKVLTLSEFKNHAGFTVSRPCLNLFMESGEPFTLCLLQAWSAEYKTRKSQNQTANVVDNDRNDDSCGLCGEGGELICCDNCPSTFHLTCLSVQEIPEGNWYCINCTCRICGNLVIDKEASDTHDSLQCSQCEQKYHEKCIGEGANQEGAVSDTWFCSQSCQEVYSSLQSQVGLVNQVANGFSWTLLRCIHDDQKVHSAQWLSLKAVCNTKLAVALTIMEECFVSMLDLRTGIHMIPQVLYNWGSDFARLNFQGFYTMVLEKQDVLISVASIRVHGTTAAEMPLIATCSRYRRQGMCRLLVNSIEEMLISVKVEKLVVSAIPDLVETWTKGFGFVPVGDIEKRRLKKLNLMVFPGTVLLEKSLYGKKKNEGLHDQSIASDELFVEICSEGMTIAESLPQDFGYVTTTNEVGAKSEYEPVDCQNQPGNRTDSETNKVDNNQAVEIIPFEGNNVQELITSNRMQIENCFANKDGTESGVGLIEDKNIKLDKDGTESGVGLIEDKNIKLDKVEENDLHEHVSNMSCKTFSGNNFDTVSNFECSVMYDETANFGTLANSAKSMES 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06110 1346 PANTHER PHD FINGER FAMILY PROTEIN 4 1309 - -
Vivi2g06110 1346 Gene3D - 996 1133 - -
Vivi2g06110 1346 SUPERFAMILY FYVE/PHD zinc finger 837 892 IPR011011 -
Vivi2g06110 1346 SUPERFAMILY FYVE/PHD zinc finger 892 951 IPR011011 -
Vivi2g06110 1346 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 999 1149 IPR000182 GO:0016747
Vivi2g06110 1346 MobiDBLite consensus disorder prediction 539 560 - -
Vivi2g06110 1346 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 999 1125 IPR016181 -
Vivi2g06110 1346 Pfam Tify domain binding domain 774 824 IPR032308 -
Vivi2g06110 1346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 841 895 IPR013083 -
Vivi2g06110 1346 Pfam PHD-finger 852 893 IPR019787 -
Vivi2g06110 1346 CDD PHD1_AIRE 852 891 - -
Vivi2g06110 1346 SMART PHD_3 851 892 IPR001965 -
Vivi2g06110 1346 SMART PHD_3 893 947 IPR001965 -
Vivi2g06110 1346 ProSiteProfiles Zinc finger PHD-type profile. 849 894 IPR019787 -
Vivi2g06110 1346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 896 951 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06110 Vivi-Chr2 194797053 194806002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06110 1 404 PHD Transcription Factor Family AT3G14980 31.127 2.98e-43 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi2g06110 TDBD 9.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06110 - - mtr:25487250 2116.27