Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g06110 | ATGGATCATTTGTGCGATGATAACTTTGAAGGATCTAAGGAAGAAAGACAGATTTTTACAGAGGTCTTTTTTGGTGAATGCACTTTTCAGTCTAGTCAGAGGCGTGTTGTTTCTGGAGCCATCAACCTTGAACATGAATCCACAATCAACACATTCAAATCATTTGGCTCTAGTAATGAAAACTCGATCTTATTGCGTCCCTCGTCATCAAGATTTACACACCATGAGGAGGACATTAATGTAAGTCAGCATTCCAATGAGACTGCCCTGGGGTGCATGCCAGAGAGTTTAACTTGTGAAGACCTGAATGATGAGATTGTAAATGTTAAACGTATGAAGTTTTCTCTACATGAACTTCCTTGTAGTAGATCTAATTCAGAAGATGTTCTGGGTTCTTCGGGAATTCTGAAAGAAGTAATTTCCTTCCCGCCTTGTGCTGCTACAGACTGTGATAGTGACTCAATTGCATTTCGGACAGTTGAATCATCTAAACATGGCGTAGTATCTAGTTGCTGTCTGTTGAAGCATAACTTGGTACAGAATAAACATGCTTCGAATAATGATGTAGATGTTACAAACTGTAAATCTGAATCTGCAAATGGGAACATCACAAAAGAAATGTCTGCAAATAAGGTAGTTGCTTCTCCTGTATCCCAGGAGAGCTCGGCAAACAGGCTAGCTGTAACGAGTTCATCAATCACTGTTGTGAAGAAGTCTTCCTTTCCTTTAAAAACTGAGGAAATGGCAGAAGGGTTTCAATCTTCTAATATGATTATCTCAAATTCAGTGTCAAAGCTAGACAAAGAGGATCCCCGTTTCATACTGCAGTTTCACATTGTGCAGTTGCTTACGTTGTCAGGCTGGTCTATTGGGAAACATCAGCGGCCTTGTAGGCGGTGGATGGAGTCATTCTACAAGACACCAAAGGGAAAAACTATTAGGGAATTTACTAAAGTTTGGAGATTATGTGGCCATCTTTTGTCTGTTGAAAAATGCAAAGTACCATATGAAGGCCGTAAGGAATGGGCGGGTATTAGTGATTTCTGGTCTGATCTATTGAGTACTCTAAAAAATGTTGATAAATCAAAAACCCAGTCAGAAACGACAGCTATGTTGGCTTATCAATGGTGGCTTTTGGATCCTTTTGTAGTAGTCATATATTTCGATAGAAAGATCGGTGCTCTGAAAAAGGGAGAGGTAATAAAAGCATCTAGTAGTTTAGTTTCTAGTAAGGGTAAAATGGCATATGATCCAGTTGATTCAGCATGGGAAGATAGTTCTCGTGCTCATTCTGATCAAAAGCACGGCCAAGCCGTTTTATGTGACTCTTCAACAGCAACTGGAGCCACTAAAATATCTGCTTTAGTGATAAACAATCATGCTTGTAATCAGAAATCTGGTGGCAATCAAGAAGATATGCATGTTGGAGAACACAAACCTAACGTCATTGAAAATCGATGTAGGGAAATGTCAGTGAGCAAAAGTAGCATGGATCTAGTGTCCTTACCTGCTTGTGCATTGGGCAGCACTGTTACCCAATCAAATGCTTCCTCTTTCAATGCTCTTCCAAGCTCAGGAAATTTGGACTTGGATTCTAAAGTGAATGCTGTTCATCAAGATAAACATAGAGATTCCAAAAACATTGATAAGTATACATCAGATAATCGGTCTGAATATAGTGAAGAGGGGAGGAAAATCTCAGTGGCTTCTGTATTTGGGAAAGATAGTACATGGTCCTCATCTAATGGTATTCTTAAAAAGAAAACGCGGAGGAAGTGCAAAAGGATATCTCAAATCAAACTGAGTATGTTATACCATAGTGACATACTGGGATCAACTATCACTGACCAGGTGCAGTCATTGAATGGTGATGCATGTGGCGCTCAAGCTGGTTTGAAAGAAGTTCAGAATTATGTAGTTGACAGTATGGGAAAAAAAAGGAACTGCAAGAAGTTATTGGGCACTGCAAACCAGCGACATATTAGGAAAGCAAATAAGTCCAAGAGGTGCCATATTGAAGACGATGATCTATTAGTGTCAGCAATATTCAAGAATAAGGACTTCAACCCAAAGACAATCCGAGGCAATTCTAGAGCTAAACCTGGCAAGTCAAGGGGTTTGAGAAAGCTTAAAAGCCATAAAGGTCGCTGTAGGTTGCTACCAATGAACCCTTGTTATGGAGGGAAGCACAATAAGGATGGGAAGAAGTATTATCTTGGGGAAAGGACTCTCTTGTCCTGGTTGATTGAGAATAGGGTCATATCTTTAAATGATATCATTCAATATCGAAACCCTAAAGATAATTCTGTCACTAAGGATGGTAAAATCACTAAAGACGGTATTGTTTGTAAGTGTTGCAGTAAAGTGCTTACATTATCAGAGTTCAAGAATCATGCTGGGTTTACAGTGAGTCGCCCTTGCTTGAATCTTTTCATGGAATCTGGTGAGCCCTTTACACTTTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAACCAGGAAAAGTCAAAATCAAACTGCAAATGTCGTTGATAATGACAGAAATGATGACTCGTGCGGGTTGTGTGGTGAGGGAGGTGAGCTGATATGTTGTGATAACTGCCCTTCTACTTTTCACCTGACTTGTTTGTCCGTTCAGGAGATCCCTGAAGGCAACTGGTACTGCATAAACTGCACTTGTCGGATTTGTGGAAATTTGGTCATTGATAAAGAGGCTTCAGATACACATGATTCATTACAATGTTCTCAATGCGAACAAAAATATCATGAGAAATGCATAGGAGAAGGAGCTAACCAAGAAGGAGCAGTTTCAGACACTTGGTTTTGTAGTCAGAGTTGTCAAGAGGTATACTCTAGTCTCCAATCTCAAGTGGGGCTAGTTAATCAAGTTGCCAATGGCTTTTCATGGACGCTTCTAAGATGCATACACGATGATCAAAAGGTTCATTCTGCTCAGTGGTTATCCCTAAAGGCAGTATGCAATACAAAACTAGCTGTTGCCCTTACCATCATGGAGGAATGTTTTGTGTCAATGTTAGATCTAAGAACAGGCATCCACATGATACCCCAAGTTTTATACAATTGGGGGTCTGATTTTGCTCGCCTGAATTTTCAAGGGTTTTACACCATGGTGTTGGAGAAACAAGATGTATTAATATCTGTAGCATCTATCAGAGTGCATGGGACTACAGCTGCTGAGATGCCTCTAATTGCAACTTGCAGTCGGTATCGTCGCCAAGGAATGTGTCGACTCCTTGTGAACTCAATTGAAGAGATGTTAATATCTGTCAAGGTAGAAAAGCTTGTGGTATCAGCCATTCCTGATTTGGTGGAGACATGGACTAAGGGCTTTGGATTCGTACCTGTAGGTGACATTGAAAAGCGGAGATTAAAAAAGCTCAATTTAATGGTTTTTCCTGGAACAGTATTACTTGAAAAATCCTTGTATGGCAAGAAGAAAAATGAAGGACTGCATGATCAATCAATAGCATCAGATGAATTGTTTGTAGAAATCTGTTCTGAAGGAATGACCATAGCCGAATCATTGCCTCAAGATTTTGGGTATGTAACTACTACCAATGAAGTTGGTGCTAAGTCAGAATATGAACCTGTGGACTGCCAAAATCAACCAGGCAATAGGACTGACAGTGAAACCAACAAAGTTGATAATAATCAAGCAGTTGAAATCATCCCCTTTGAAGGAAACAATGTGCAGGAATTGATAACAAGCAACAGAATGCAAATTGAGAACTGTTTTGCTAACAAAGATGGTACTGAATCAGGTGTAGGACTTATTGAGGACAAGAATATCAAATTAGACAAAGATGGTACTGAATCAGGTGTAGGACTTATTGAGGACAAGAATATCAAATTAGACAAAGTTGAGGAAAATGATTTGCATGAACATGTTTCAAATATGTCATGCAAAACATTTTCCGGCAACAATTTTGACACAGTTTCTAATTTTGAATGCTCAGTGATGTATGATGAAACAGCTAATTTTGGAACATTAGCAAACTCTGCAAAATCAATGGAAAGTTGA | 4041 | 0.3947 | MDHLCDDNFEGSKEERQIFTEVFFGECTFQSSQRRVVSGAINLEHESTINTFKSFGSSNENSILLRPSSSRFTHHEEDINVSQHSNETALGCMPESLTCEDLNDEIVNVKRMKFSLHELPCSRSNSEDVLGSSGILKEVISFPPCAATDCDSDSIAFRTVESSKHGVVSSCCLLKHNLVQNKHASNNDVDVTNCKSESANGNITKEMSANKVVASPVSQESSANRLAVTSSSITVVKKSSFPLKTEEMAEGFQSSNMIISNSVSKLDKEDPRFILQFHIVQLLTLSGWSIGKHQRPCRRWMESFYKTPKGKTIREFTKVWRLCGHLLSVEKCKVPYEGRKEWAGISDFWSDLLSTLKNVDKSKTQSETTAMLAYQWWLLDPFVVVIYFDRKIGALKKGEVIKASSSLVSSKGKMAYDPVDSAWEDSSRAHSDQKHGQAVLCDSSTATGATKISALVINNHACNQKSGGNQEDMHVGEHKPNVIENRCREMSVSKSSMDLVSLPACALGSTVTQSNASSFNALPSSGNLDLDSKVNAVHQDKHRDSKNIDKYTSDNRSEYSEEGRKISVASVFGKDSTWSSSNGILKKKTRRKCKRISQIKLSMLYHSDILGSTITDQVQSLNGDACGAQAGLKEVQNYVVDSMGKKRNCKKLLGTANQRHIRKANKSKRCHIEDDDLLVSAIFKNKDFNPKTIRGNSRAKPGKSRGLRKLKSHKGRCRLLPMNPCYGGKHNKDGKKYYLGERTLLSWLIENRVISLNDIIQYRNPKDNSVTKDGKITKDGIVCKCCSKVLTLSEFKNHAGFTVSRPCLNLFMESGEPFTLCLLQAWSAEYKTRKSQNQTANVVDNDRNDDSCGLCGEGGELICCDNCPSTFHLTCLSVQEIPEGNWYCINCTCRICGNLVIDKEASDTHDSLQCSQCEQKYHEKCIGEGANQEGAVSDTWFCSQSCQEVYSSLQSQVGLVNQVANGFSWTLLRCIHDDQKVHSAQWLSLKAVCNTKLAVALTIMEECFVSMLDLRTGIHMIPQVLYNWGSDFARLNFQGFYTMVLEKQDVLISVASIRVHGTTAAEMPLIATCSRYRRQGMCRLLVNSIEEMLISVKVEKLVVSAIPDLVETWTKGFGFVPVGDIEKRRLKKLNLMVFPGTVLLEKSLYGKKKNEGLHDQSIASDELFVEICSEGMTIAESLPQDFGYVTTTNEVGAKSEYEPVDCQNQPGNRTDSETNKVDNNQAVEIIPFEGNNVQELITSNRMQIENCFANKDGTESGVGLIEDKNIKLDKDGTESGVGLIEDKNIKLDKVEENDLHEHVSNMSCKTFSGNNFDTVSNFECSVMYDETANFGTLANSAKSMES | 1346 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g06110 | 1346 | PANTHER | PHD FINGER FAMILY PROTEIN | 4 | 1309 | - | - | |
Vivi2g06110 | 1346 | Gene3D | - | 996 | 1133 | - | - | |
Vivi2g06110 | 1346 | SUPERFAMILY | FYVE/PHD zinc finger | 837 | 892 | IPR011011 | - | |
Vivi2g06110 | 1346 | SUPERFAMILY | FYVE/PHD zinc finger | 892 | 951 | IPR011011 | - | |
Vivi2g06110 | 1346 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 999 | 1149 | IPR000182 | GO:0016747 | |
Vivi2g06110 | 1346 | MobiDBLite | consensus disorder prediction | 539 | 560 | - | - | |
Vivi2g06110 | 1346 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 999 | 1125 | IPR016181 | - | |
Vivi2g06110 | 1346 | Pfam | Tify domain binding domain | 774 | 824 | IPR032308 | - | |
Vivi2g06110 | 1346 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 841 | 895 | IPR013083 | - | |
Vivi2g06110 | 1346 | Pfam | PHD-finger | 852 | 893 | IPR019787 | - | |
Vivi2g06110 | 1346 | CDD | PHD1_AIRE | 852 | 891 | - | - | |
Vivi2g06110 | 1346 | SMART | PHD_3 | 851 | 892 | IPR001965 | - | |
Vivi2g06110 | 1346 | SMART | PHD_3 | 893 | 947 | IPR001965 | - | |
Vivi2g06110 | 1346 | ProSiteProfiles | Zinc finger PHD-type profile. | 849 | 894 | IPR019787 | - | |
Vivi2g06110 | 1346 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 896 | 951 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g06110 | Vivi-Chr2 | 194797053 | 194806002 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g06110 | 1 | 404 | PHD Transcription Factor Family | AT3G14980 | 31.127 | 2.98e-43 | 170 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Vivi2g06110 | TDBD | 9.1e-17 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g06110 | - | - | mtr:25487250 | 2116.27 |