Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06103 ATGTCGCGTTCGCCGGGAGATTCCAAACCCGATTCTCCCCGGGGTAAACTCACCGATCGGTTTCGTCAAGCGGTGAGTTTAGTAACGAAACCGAAAAGAGCGAGTAAACCGGATGTTCGTGAACTCGATCACGGTTCACCGGTTTCGCCATTGAGGACGACAAGTGGTGTACCGGCGATTAGTAGTAGTTCGGGTTCTTCTGGATCTTTCTCTGGTAAGACCGGGTCTAAACCGGTTTCGAATTCGAAGAAGTCGAGTTCGGCGCCGATTCATAGCAGTAACTCCGGTGAGCTTTCTGGTTCGAGTGATAACAGTCCAAGAAGTAGATCCGGAGGGAATGTGAGAGGTTCGAAACCGAAAGCGGGGGATTCAAGATCCAATTCGGGATCCGGCGCGACTCCGAAGGCGCATTCTGGTCAAACTGTGAACTCTCCGCCGATTAATGTTCTTCCGGCGGGGAATATTTGTCCTTCTGGAAAGGTCGTGAAGACCGGCATGGCGTACAAGAATACCAAGAGTGATGTTCTTGGTTATGGAACTGGGAACTATGGTCACGGGAGTATAATGCGCGGCGGCACTGCCGGTGGCGCCGGGAGAGTTGATGCGAGTAGTACGAGGAGCGGCATTGGGAGTGATTCGGGGAAAAGAGGGATGGAAAGTGTGGATCCGGAACAGCTCAAGTTAGTAGGGAATGAGCATTACAAGAACGGTCAATTTGCGGAGGCTTTGAGTTTTTATGACCGTGCAGTTGCTGCTTTGCCGAGGAGTGCTTCTTATCGGAGCAACCGCGCCGCCGCGTTGATCGGTTTGGGAAGACTTCCTGAAGCTGTGAGGGAATGTCAGCAGGCTCTCAATTGTGATCCTGATTATGTTAGGGCTCATCATCGTTTGGCTTCTCTATTCATCAGGTTAGGACAAGTTGAGAATGCTAGGAGACACCTTTGTCATCCTGGATTGACTCCAAATCCGACCGAGATGCTGAAGTTGCAACTGGTGGATAAGCATATTAGTAAGTGTACAGATGTTAGGAGGGCAGGGGATTGGAAAAGTGTTCTGAGGGAACTTGATGCTGCTTCTACTGCTGGAGCTGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTTTGAAACTTCATCAAATTGATGATGCAGAATCAGTTTTGTCACATGCTCCGAAATCGGATCCACAAATTAATCATACACCTTTTGAAGCAATATTTTTTGGGATGCTTGCTGAAGCTTATTCCTACTATGTCAGAACTCAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCGGTTACATCTGTAGAGAAGGCAAATCATATTGATCCCCAAAATATTGAAATTGCTGTTTTACTTAACAAAGTAAAGAAAGTGGCAAGAGCTCGGACTCGTGGTAATGATCTTTTCAAATCTGAGCGGTTCACTGAAGCTTGCTCGGCATATGGAGATGGTTTGAGATTGGACCCTTCAAATTCTGTTCTGTATTGCAATAGAGCAGCATGTTTGTATAAGATTGGTGAATGGCAAAAATCAATTGATGACTCTAACCAAGCTTTATTTTACCGCCCAAATTATACAAAAGCTCTTCTTCGAAGGGCTACATCATATAACAAGCTAGAAAAGTGGGAAGAAGCGGTTAAAGATTACGAGGTCTTGCGAAAAGAACTTCCAAATGACAATGATGTTGCCGAAGCTCTTTTTCATGCAACTGTTTCACTAAAAAAGTCTCGTGGAGAAGAAGTTACTAATTTGAAGTTTGGTGGTGAAGTGGAACGAGTATCAGGTCTTGAGCAGTTTAGAACTGCAATATCTTCATCAGGTGTTTCTGTTGTCCATTTTGAAGGTGCATCCAACTCGAAATGCAGGCAATTATCGCCATTTTTGGATACATTATGTGCCAAATATCCATCTGTTAACTTCCTCAAGGTGGACATTTATGAAAACGCAACAGTTGCATCTGCTGAGAATGTTAGAATTGTACCAACCTTCAAGATATACAAAAATGGAAACCAAGTGAAAGTGATCGTAAGCCCTAGTCTCGATGTGTTGGAGCAGTCTGTCAAGCATTACAGCCTTTAG 2091 0.4519 MSRSPGDSKPDSPRGKLTDRFRQAVSLVTKPKRASKPDVRELDHGSPVSPLRTTSGVPAISSSSGSSGSFSGKTGSKPVSNSKKSSSAPIHSSNSGELSGSSDNSPRSRSGGNVRGSKPKAGDSRSNSGSGATPKAHSGQTVNSPPINVLPAGNICPSGKVVKTGMAYKNTKSDVLGYGTGNYGHGSIMRGGTAGGAGRVDASSTRSGIGSDSGKRGMESVDPEQLKLVGNEHYKNGQFAEALSFYDRAVAALPRSASYRSNRAAALIGLGRLPEAVRECQQALNCDPDYVRAHHRLASLFIRLGQVENARRHLCHPGLTPNPTEMLKLQLVDKHISKCTDVRRAGDWKSVLRELDAASTAGADSSPQLFMCRAEALLKLHQIDDAESVLSHAPKSDPQINHTPFEAIFFGMLAEAYSYYVRTQIEMALGRFENAVTSVEKANHIDPQNIEIAVLLNKVKKVARARTRGNDLFKSERFTEACSAYGDGLRLDPSNSVLYCNRAACLYKIGEWQKSIDDSNQALFYRPNYTKALLRRATSYNKLEKWEEAVKDYEVLRKELPNDNDVAEALFHATVSLKKSRGEEVTNLKFGGEVERVSGLEQFRTAISSSGVSVVHFEGASNSKCRQLSPFLDTLCAKYPSVNFLKVDIYENATVASAENVRIVPTFKIYKNGNQVKVIVSPSLDVLEQSVKHYSL 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06103 696 SUPERFAMILY TPR-like 368 554 IPR011990 GO:0005515
Vivi2g06103 696 SUPERFAMILY TPR-like 223 314 IPR011990 GO:0005515
Vivi2g06103 696 SUPERFAMILY Thioredoxin-like 500 694 IPR036249 -
Vivi2g06103 696 Pfam Tetratricopeptide repeat 532 562 IPR019734 GO:0005515
Vivi2g06103 696 MobiDBLite consensus disorder prediction 48 112 - -
Vivi2g06103 696 MobiDBLite consensus disorder prediction 120 148 - -
Vivi2g06103 696 MobiDBLite consensus disorder prediction 194 221 - -
Vivi2g06103 696 Pfam Thioredoxin 601 689 IPR013766 -
Vivi2g06103 696 Gene3D Glutaredoxin 589 695 - -
Vivi2g06103 696 FunFam TPR repeat-containing thioredoxin TTL4 588 695 - -
Vivi2g06103 696 Pfam Tetratricopeptide repeat 234 293 - -
Vivi2g06103 696 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 41 693 IPR044534 -
Vivi2g06103 696 MobiDBLite consensus disorder prediction 1 149 - -
Vivi2g06103 696 ProSiteProfiles TPR repeat profile. 416 449 IPR019734 GO:0005515
Vivi2g06103 696 Gene3D Tetratricopeptide repeat domain 221 582 IPR011990 GO:0005515
Vivi2g06103 696 CDD TRX_family 601 692 - -
Vivi2g06103 696 SMART tpr_5 367 400 IPR019734 GO:0005515
Vivi2g06103 696 SMART tpr_5 496 529 IPR019734 GO:0005515
Vivi2g06103 696 SMART tpr_5 530 563 IPR019734 GO:0005515
Vivi2g06103 696 SMART tpr_5 416 449 IPR019734 GO:0005515
Vivi2g06103 696 SMART tpr_5 223 256 IPR019734 GO:0005515
Vivi2g06103 696 SMART tpr_5 257 290 IPR019734 GO:0005515
Vivi2g06103 696 SMART tpr_5 462 495 IPR019734 GO:0005515
Vivi2g06103 696 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06103 Vivi-Chr2 194647376 194651527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06103 464 606 U-box Gene Family AT3G07370 27.778 1.56e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06103 - - gmx:100795358 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06103 2 194647376 194651527 Vivi2g06103 2 194647376 194651527 ECH