Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06097 ATGACTGAAATCACAAAAATGTTTGATACCAAAGCTCTTGTACCTGCAATTACCTCAATTGTGCTAATGCGGACTATCACAAATGAACTCGTTCCTCATGAGCTTCTACATTTTTTTCAATCAGGAATTCATCATCTTTTTCGTCAATTTTCGGCGCAATTCACCATAGTCATTGAAGAATTTCAAGGGATGGCAAGAAACCAAGTTTTTGAGGCTGCAGAAATATACCTTGGAACTAAAGCAACTGTCTCAGCAGATAGAGTTAAAGTAAGCAAATCCGAGGATCATAAAAAGCTTTCATTCAATATTGATAGAAATGAAGAAGTGAGTGATGTTTTTGAAGGTGTTAGTGTAAAGTGGAAACTAATTTGCATATCTGTCGACTCGTCGAGAATTCGTCATTACGATCATGAGTCCTCGTCTGTGGCAGAAATAAGATCATACGAGATAACTTTTCACAAGAAACACAAGAATAAGATCTTTGATTCATATTTGCCTTATGTGATGGAAGTAGCTAAGAAAATTAAACAAGGAAACGTAGCTGTTAAGATTCACTCAAATGAATATAACAGTTGGAGTCATGAACCTGTTAAGTTCAACCATCCAATGAGTTTCAACACTCTTGCAATTGATGAAAAGCTTCAAAGAGAAATTGTGAATGATTTGGACAAGTTTGTGAAGGCTAAAGAGTTTTATAGAAGAACGGGAAAAGCTTGGAAACGCGGTTACTTGTTGTATGGTCCTCCTGGTACTGGCAAGTCTAGCTTGATTGCAGCCATGGCTAACTATCTCAACTATGATATCTATGACTTGGATCTCACTGATGTAATAGACAATAAGTGCTTGAGGCAGCTTCTTCTCAGAATGTCCAACCGTTCTATACTTGTGATAGAGGATATTGATTGCACTATTAATCTGCAGAACCGAGAAAAAGATGAAGAAGTGGTTGATAATGGATCCAATAAGATGACACTATCAGGACTATTGAATGCTGTTGATGGTCTTTGGTCGTGTTGTGGAGAGGAACACATAATTGTTTTCACAACAAATCACAAAGAAAGACTTGATCCTGCTTTGTTAAGGCCTGGTAGAATGGACAAGCAGATTCATTTGTCATATTGTAACTTCTATGCTTTTAAGCAATTAGCCATCAACTATCTTTGCATTAGCGAACATGAACTGTACGAAAAGATTGAACAACTTTTAGGACAAGTTGAAGTTACTCCAGCTGAAATAGCAGAAGAGCTTACAAAGGATGTTGATGCTACAGAAATCCTACAAGACCTTATCAAATTCCTCCAAACTAAGAAAATGATCAAAGAAGAGATTAAGAATGAAGAAAATTACAATGATGAAGAACAAGAACTAGGTAGAGAAAATATATAG 1386 0.3629 MTEITKMFDTKALVPAITSIVLMRTITNELVPHELLHFFQSGIHHLFRQFSAQFTIVIEEFQGMARNQVFEAAEIYLGTKATVSADRVKVSKSEDHKKLSFNIDRNEEVSDVFEGVSVKWKLICISVDSSRIRHYDHESSSVAEIRSYEITFHKKHKNKIFDSYLPYVMEVAKKIKQGNVAVKIHSNEYNSWSHEPVKFNHPMSFNTLAIDEKLQREIVNDLDKFVKAKEFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDVIDNKCLRQLLLRMSNRSILVIEDIDCTINLQNREKDEEVVDNGSNKMTLSGLLNAVDGLWSCCGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFYAFKQLAINYLCISEHELYEKIEQLLGQVEVTPAEIAEELTKDVDATEILQDLIKFLQTKKMIKEEIKNEENYNDEEQELGRENI 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06097 461 CDD RecA-like_BCS1 218 371 - -
Vivi2g06097 461 Coils Coil 436 459 - -
Vivi2g06097 461 PANTHER BCS1 AAA-TYPE ATPASE 17 441 - -
Vivi2g06097 461 Pfam Domain associated at C-terminal with AAA 31 123 IPR025753 -
Vivi2g06097 461 SMART AAA_5 239 375 IPR003593 GO:0016887
Vivi2g06097 461 Gene3D - 370 443 - -
Vivi2g06097 461 Pfam ATPase family associated with various cellular activities (AAA) 244 372 IPR003959 GO:0005524|GO:0016887
Vivi2g06097 461 Gene3D - 193 369 IPR027417 -
Vivi2g06097 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 416 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06097 Vivi-Chr2 194150550 194152717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06097 215 375 Calmodulin-binding Proteins AT3G56690 27.168 2.26e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06097 K08900 - gmx:100778503 575.089