Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06094 ATGAAGTTTGATACCAAGCCACTTGTGTCTGCAATGGCCTCAATTATGGTAATGCGTACCATAAAAAACGAACTCATTCCTCATGAGTTCCTTAGCATTTTTCAATCTGGACTTGATCATCTTTCTCGTCGATTTTCGGCGCAATTCACCATAGTCATTGAAGAATTTCAAGGGATGGCAAGAAATCAAGTTTTTGAGGCTGCAGAAATCTACCTTGGAACTAAAGCAGCAACTGTCTCAGCAGAGAGAGTTAAGGTAAGTAAATCTGAGGAACATAAAAAGCTTTCATTCAATATTGATAGAAATGCAGAAGTGGATGATGTTTTTGAAGGTGTTAGTGTAAAGTGGAAACTAATCTGCATACAAGTCGACTCGTCGCGGATACGTCATTACGATAATGACTCCTCGGCCGTGGCCGAAATAAGATCCTACGAGCTAACTTTTCACAAGAAACACAAGAACAAGGTTTTCAATTCATATTTGCCATATGTAATGGAGATAGCAGATAAGATTAAACAAGGAAACATGGCAATCAAGATTCACTCAAACGAATATAATTATTGGAGCCGCGATGTCAAGTTCAACCATCCAATGAGTTTCGATACTCTTGCCATTGATGAAAAGCTTCAAAGGGAAATTGTGAATGATTTGGACAAATTTGTGAAGGCTAGAGACTTTTATAGAAGAACTGGGAAAGCTTGGAAACGCGGTTACTTGTTGTATGGTCCTCCTGGAACCGGAAAGTCTAGTTTGATTGCTGCCATGTCTAATTATCTCCACTATGATATCTATGACTTGGATCTCACTGTTGTAGGCGATAATAGGAGCTTGAAGCAACTGATTCTTGGCATGTCGAATCGTTCTATACTTGTGATAGAAGATATTGATTGCACTATTAAACTGCAGAACCGAGAAGAAGGCGAGGAAGCCTCTAATAATGGACACGATAAGGTGACACTATCAGGACTATTGAATGCGACAGATGGTCTTTGGTCATGTTGTAGCGAGGAACACATAATTATTTTCACAACAAATCACAAAGAAAGACTTGATCCTGCCTTGTTAAGGCCTGGTAGAATGGACAAGCAGATTCATTTGTCGTATTGCAACTTTTCTGCTTTCAAGCAATTGGCAATGAACTATCTTTGCATTAGTGAACATGAACTATATGAAAAGATTGAAGAACTTTTAGGACAAGTGAACGCTACTCCAGCTGAAATTGGGGAAGTCCTAACAAAGGATGCTGATGCTACAGAATGCTTACAAGACCTTATTAATTTCCTTCAAAAGAAGAAAATGATCCAGGAAGAGGGTAAGAATGAAGCAAATGTCAAAGAAGAATAA 1344 0.3869 MKFDTKPLVSAMASIMVMRTIKNELIPHEFLSIFQSGLDHLSRRFSAQFTIVIEEFQGMARNQVFEAAEIYLGTKAATVSAERVKVSKSEEHKKLSFNIDRNAEVDDVFEGVSVKWKLICIQVDSSRIRHYDNDSSAVAEIRSYELTFHKKHKNKVFNSYLPYVMEIADKIKQGNMAIKIHSNEYNYWSRDVKFNHPMSFDTLAIDEKLQREIVNDLDKFVKARDFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMSNYLHYDIYDLDLTVVGDNRSLKQLILGMSNRSILVIEDIDCTIKLQNREEGEEASNNGHDKVTLSGLLNATDGLWSCCSEEHIIIFTTNHKERLDPALLRPGRMDKQIHLSYCNFSAFKQLAMNYLCISEHELYEKIEELLGQVNATPAEIGEVLTKDADATECLQDLINFLQKKKMIQEEGKNEANVKEE 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06094 447 Gene3D - 189 364 IPR027417 -
Vivi2g06094 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 411 IPR027417 -
Vivi2g06094 447 Pfam ATPase family associated with various cellular activities (AAA) 239 367 IPR003959 GO:0005524|GO:0016887
Vivi2g06094 447 SMART AAA_5 234 370 IPR003593 GO:0016887
Vivi2g06094 447 CDD RecA-like_BCS1 213 366 - -
Vivi2g06094 447 Gene3D - 365 436 - -
Vivi2g06094 447 PANTHER BCS1 AAA-TYPE ATPASE 9 436 - -
Vivi2g06094 447 Pfam Domain associated at C-terminal with AAA 26 119 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06094 Vivi-Chr2 194098662 194100404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06094 210 370 Calmodulin-binding Proteins AT3G56690 28.409 1.51e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06094 K08900 - gmx:100778503 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06094 2 194098662 194100404 Vivi2g06094 2 194098662 194100404 ECH