Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06070 ATGTCGTTGATGAAGGTTTTTCGATCTGGCAAATTCTCGAGATCCTTTAAGGAGGTTCCGTCATCTCTCGATGCTACCGGTGATGACCGGAATGGAACCGTCGTCAGTGAACCGGAGGACGGAACTGATTGGTCTACCATGCTGCCGGATCTACTTGCCGAGATAATCAAACGAGTTGACGCCGCCGAGGAACAGTGGCCGCGCCGTCAAGACGTCGTCGCTTGCGCCTGCGTTTGTAAACGGTGGAGAGATGTTACGCGGGAGACCGTAATGTCACCGCGTGACGGAAGAATCACTTTTCCGTCTTGTCTTAAACAGCCAGGACCACGAGACCTACCTCATCAATGTCTAATTAAGCGGGATAAGAAGACTTCCACATTTTACCTCTATCTTTCCCTTACATCATCATTCACAGATAAAGGGAAGTTTCTATTAGCAGCTAAAAGATATAGGTGTGGTACCCATATTGAGTATGTTATATCGCTTGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGCAAGCTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCGTCCACCCCATAATGGTGCCAAACCATCATGTGCCAAATCTAGCCGTCGTTTTGCAAGCAAACAGATAAGCCCTCATGTTCCTCATGTCCCTGCTGGTAACTTTGAGGTCGGGAATGTCTCTTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGAAGAATGACTTGCTCTCTTAATTCTACTGTCTCATCAATCGGTGAAAGCTCAGATGGCAAGTCATTCGATGGCCACAAGATGCACCCTACCTCTCTCAAATCTACTGTCTCACCAATGGGTGAGAGCTCAGAAGGCAAGTCTTGCGATGGCCAGAAGATGGACCCTTGCTCTCTCAAGTCTACTGTCTCATTAACGGGTAAAAGCTTAGATGCCAAGTCTTTCGCTGACCACATGATGCCCCGCAAAAAACCTTCTGCCCACACTATCTTGAAAAACAAAGCTCCAAGGTGGCACGAACATTTACAATGCTGGTGCTTGAACTTCCACGGTCGGGTAACAGTGGCATCAGTGAAGAACTTTCAGCTGATTGCCACTGTGGACCAGAGCCAACCCGAAGGAAAAGGAGATCAAGAAACTGTTCTACTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACCATGGACTATAGACAGCCCTTATCCGCCTTCCAGGCGTTTGCGATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1278 0.471 MSLMKVFRSGKFSRSFKEVPSSLDATGDDRNGTVVSEPEDGTDWSTMLPDLLAEIIKRVDAAEEQWPRRQDVVACACVCKRWRDVTRETVMSPRDGRITFPSCLKQPGPRDLPHQCLIKRDKKTSTFYLYLSLTSSFTDKGKFLLAAKRYRCGTHIEYVISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSCAKSSRRFASKQISPHVPHVPAGNFEVGNVSYKFNLLKSRGPRRMTCSLNSTVSSIGESSDGKSFDGHKMHPTSLKSTVSPMGESSEGKSCDGQKMDPCSLKSTVSLTGKSLDAKSFADHMMPRKKPSAHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLIATVDQSQPEGKGDQETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06070 425 PANTHER TUBBY-RELATED 37 423 - -
Vivi2g06070 425 MobiDBLite consensus disorder prediction 18 40 - -
Vivi2g06070 425 MobiDBLite consensus disorder prediction 273 289 - -
Vivi2g06070 425 ProSitePatterns Tub family signature 1. 353 366 IPR018066 -
Vivi2g06070 425 Gene3D Tubby Protein; Chain A 99 292 IPR025659 -
Vivi2g06070 425 Gene3D Tubby Protein; Chain A 293 425 IPR025659 -
Vivi2g06070 425 MobiDBLite consensus disorder prediction 254 298 - -
Vivi2g06070 425 SUPERFAMILY Tubby C-terminal domain-like 96 425 IPR025659 -
Vivi2g06070 425 Pfam F-box domain 49 87 IPR001810 GO:0005515
Vivi2g06070 425 Gene3D - 37 91 - -
Vivi2g06070 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Vivi2g06070 425 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Vivi2g06070 425 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Vivi2g06070 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Vivi2g06070 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Vivi2g06070 425 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Vivi2g06070 425 PRINTS Tubby superfamily signature 353 369 IPR000007 -
Vivi2g06070 425 PRINTS Tubby superfamily signature 335 352 IPR000007 -
Vivi2g06070 425 SUPERFAMILY F-box domain 38 88 IPR036047 GO:0005515
Vivi2g06070 425 Pfam Tub family 104 420 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06070 Vivi-Chr2 193271506 193274394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06070 42 425 TUB Transcription Factor Family AT1G53320 66.753 0.0 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi2g06070 Tub 4.9e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06070 K19600 - gmx:100801919 562.762