Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06069 ATGTCGTTGATGAAGGTTTTTCGATCTGGCAAATTCTCGAGATCCTTTAAGGAGGTTCCGTCATCTCTCGATGCTACCGGTGATGACCGGAATGGAACCGTCGTCAGTGAACCGGAGGACGGAACTGATTGGTCTACCATGCTGCCGGATCTACTTGCCGAGATAATCAAACGAGTTGACGCCGCCGAGGAACAGTGGCCGCGCCGTCAAGACGTCGTCGCTTGCGCCTGCGTTTGTAAACGGTGGAGAGATGTTACGCGGGAGACCGTAATGTCACCGCGTGACGGAAGAATCACTTTTCCGTCTTGTCTTAAACAGCCAGGACCACGAGACCTACCTCATCAATGTCTAATTAAGCGGGATAAGAAGACTTCCACATTTTACCTCTATCTTTCCCTTACATCATCATTCACAGATAAAGGGAAGTTTCTATTAGCAGCTAAAAGATATAGGTGTGGTACCCATATTGAGTATGTTATATCGCTTGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGCAAGCTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCGTCCACCCCATAATGGTGCCAAACCATCATGTGCCAAATCTAGCCGTCGTTTTGCAAGCAAACAGATAAGCCCTCATGTTCCTCATGTCCCTGCTGGTAACTTTGAGGTCGGGAATGTCTCTTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGAAGAATGACTTGCTCTCTTAATTCTACTGTCTCATCAATCGGTGAAAGCTCAGATGGCAAGTCATTCGATGGCCACAAGATGCACCCTACCTCTCTCAAATCTACTGTCTCACCAATGGGTGAGAGCTCAGAAGGCAAGTCTTGCGATGGCCAGAAGATGGACCCTTGCTCTCTCAAGTCTACTGTCTCATTAACGGGTAAAAGCTTAGATGCCAAGTCTTTCGCTGACCACATGATGCCCCGCAAAAAACCTTCTGCCCACACTATCTTGAAAAACAAAGCTCCAAGGTGGCACGAACATTTACAATGCTGGTGCTTGAACTTCCACGGTCGGGTAACAGTGGCATCAGTGAAGAACTTTCAGCTGATTGCCACTGTGGACCAGAGCCAACCCGAAGGAAAAGGAGATCAAGAAACTGTTCTACTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACCATGGACTATAGACAGCCCTTATCCGCCTTCCAGGCGTTTGCGATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGA 1272 0.4717 MSLMKVFRSGKFSRSFKEVPSSLDATGDDRNGTVVSEPEDGTDWSTMLPDLLAEIIKRVDAAEEQWPRRQDVVACACVCKRWRDVTRETVMSPRDGRITFPSCLKQPGPRDLPHQCLIKRDKKTSTFYLYLSLTSSFTDKGKFLLAAKRYRCGTHIEYVISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSCAKSSRRFASKQISPHVPHVPAGNFEVGNVSYKFNLLKSRGPRRMTCSLNSTVSSIGESSDGKSFDGHKMHPTSLKSTVSPMGESSEGKSCDGQKMDPCSLKSTVSLTGKSLDAKSFADHMMPRKKPSAHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLIATVDQSQPEGKGDQETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06069 423 Gene3D - 37 91 - -
Vivi2g06069 423 PRINTS Tubby superfamily signature 335 352 IPR000007 -
Vivi2g06069 423 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Vivi2g06069 423 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Vivi2g06069 423 PRINTS Tubby superfamily signature 403 423 IPR000007 -
Vivi2g06069 423 PRINTS Tubby superfamily signature 353 369 IPR000007 -
Vivi2g06069 423 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Vivi2g06069 423 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Vivi2g06069 423 MobiDBLite consensus disorder prediction 18 40 - -
Vivi2g06069 423 SUPERFAMILY F-box domain 38 88 IPR036047 GO:0005515
Vivi2g06069 423 Pfam F-box domain 49 87 IPR001810 GO:0005515
Vivi2g06069 423 Pfam Tub family 104 420 IPR000007 -
Vivi2g06069 423 PANTHER TUBBY-RELATED 37 423 - -
Vivi2g06069 423 MobiDBLite consensus disorder prediction 273 289 - -
Vivi2g06069 423 ProSitePatterns Tub family signature 1. 353 366 IPR018066 -
Vivi2g06069 423 Gene3D Tubby Protein; Chain A 101 419 IPR025659 -
Vivi2g06069 423 SUPERFAMILY Tubby C-terminal domain-like 96 423 IPR025659 -
Vivi2g06069 423 MobiDBLite consensus disorder prediction 254 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06069 Vivi-Chr2 193271505 193275018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06069 42 423 TUB Transcription Factor Family AT1G53320 66.580 9.59e-179 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi2g06069 Tub 4.8e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06069 K19600 - gmx:100801919 557.37