Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06067 ATGATGAAGAGGAACAATATGAACACAAACTTGAAAGGCTATCATCAAACTTATTATAATAGTCCTATTATCACCAACAAGAGTCCTTCATCGTCGTCGTCGGAGGATTATATGATGAATGGTTTTCATCCATGGCCACCAAGATCATACACATGTAGCTTTTGTAGAAAGGAATTCAAATCGGCTCAAGCACTTGGGGGTCACATGAATGTTCATAGGAGAGATAGAGCAAGGCTTAGACAATCATCACCTCCACCAACTCACCATGAACTTCAAACTCAAACTCAAACTCAAGGTTCTTCTATGCTTAACCTTAATAATAACCCTACTAACCCTAATAACTTTTTCTCAAACTCATCATTGTTGCAACCATGTTCTTCATCTTCTTCTTCCTCTTTAGCAACAACTCTTAAGCCTATTACTTGCACATTGCCTTTGTTTGTTGTGGATGGCATTTTGTTGAACCCTAGTTTGAGCGCGATGACGTCGGAGAAATCGAAGATGGAAGAATGTGATGTTTTTGCATGTGAAGATGATCATGAGTGTAGAATGTTGAAGAAAGGTGAGAATATTATAAGGATGGATTTGGAGATTGGTTTGCCTGGAGATTATGATAACTTGGATCTTGAGCTTCGTTTGGGTACTACTGCTTATTCTAATTAG 663 0.3831 MMKRNNMNTNLKGYHQTYYNSPIITNKSPSSSSSEDYMMNGFHPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPPTHHELQTQTQTQGSSMLNLNNNPTNPNNFFSNSSLLQPCSSSSSSSLATTLKPITCTLPLFVVDGILLNPSLSAMTSEKSKMEECDVFACEDDHECRMLKKGENIIRMDLEIGLPGDYDNLDLELRLGTTAYSN 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06067 220 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Vivi2g06067 220 MobiDBLite consensus disorder prediction 85 101 - -
Vivi2g06067 220 PANTHER OS07G0101800 PROTEIN 31 215 - -
Vivi2g06067 220 MobiDBLite consensus disorder prediction 75 101 - -
Vivi2g06067 220 SUPERFAMILY beta-beta-alpha zinc fingers 47 76 IPR036236 -
Vivi2g06067 220 Pfam C2H2-type zinc finger 50 74 - -
Vivi2g06067 220 SMART c2h2final6 50 72 IPR013087 -
Vivi2g06067 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Vivi2g06067 220 Gene3D Classic Zinc Finger 45 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06067 Vivi-Chr2 193220727 193221823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06067 2 214 C2H2 Transcription Factor Family AT3G23130 35.945 2.77e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g06067 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06067 - - gmx:100781722 159.073