Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06052 ATGGAGAATCTGGTTTGGCTTTCTAGAAAAGGAAAAGAGGCAATGGAAGAAGAGCTTATAAGAGGACGTGACATGGCAAATCAATTACTTGAGGTACTTACTTTAGATGATAAGTCAAATGTTATTAGAGAAGTCAAAGGGTCAAACTCAAAATCATCAAAAGTGTTACCTTTAGATGTTGCTCAAGATCTTGTTCGAGAGGTACTTAAATCATTGACAAATACGCTTTTGTTATTGCACAACAAAGAAGACTCCAATGATGTTCCTATAGCAGTTAGAGATTTTTCTTTAACAACTAGTTGCCACAAGATGGTGGAGGATTTGGATGGGGCTTACAAACAACTCAAAACTCTAAAGACTAAAAGTCCAAAAGGATCGAAAAAGAGAAAATTATCTGCTCCAACTTGGGAAAAAACCACCTCAGTATTGATTGAGGATGGTCATACATGGAGAAAATATGGACAAAAAACGATAGCAAATTCCAAATACTTCAGGAGCTACTATAGGTGTACACACAGCGATCAACATTGTGAAGCAATGAAACATGTTCAAAGAATTCAAGAGAATCCCCCACTGTATAGGACTACATGTTATGGCCATCACACTTGCAAAAGCTATTTCCAATCAAATATAATTTCTGAACCCGTTTCGTCATCAGACTCTTCTATATTACTTAGTTTTGATAACACTATTCAAAGTAAAGAAGAAGATATGTTATGGCCGTCACCATTGCCGCCGCTATCACCGCTTCGTGTCTCTTCAGAAGGGAATCCTGTGGAAGTAATGCATGATGATCATTTTCTTCAAAATCAATGGTTTCTTCCTGAGAATCTCCAGTTATGGGAATCTGATGCTTACTTAGATTATTTAAGATATGTCAATGTGTTATCATCGAGTGAATCTTTTTAA 909 0.3641 MENLVWLSRKGKEAMEEELIRGRDMANQLLEVLTLDDKSNVIREVKGSNSKSSKVLPLDVAQDLVREVLKSLTNTLLLLHNKEDSNDVPIAVRDFSLTTSCHKMVEDLDGAYKQLKTLKTKSPKGSKKRKLSAPTWEKTTSVLIEDGHTWRKYGQKTIANSKYFRSYYRCTHSDQHCEAMKHVQRIQENPPLYRTTCYGHHTCKSYFQSNIISEPVSSSDSSILLSFDNTIQSKEEDMLWPSPLPPLSPLRVSSEGNPVEVMHDDHFLQNQWFLPENLQLWESDAYLDYLRYVNVLSSSESF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06052 302 Gene3D WRKY domain 132 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi2g06052 302 ProSiteProfiles WRKY domain profile. 139 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi2g06052 302 SMART WRKY_cls 144 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi2g06052 302 SUPERFAMILY WRKY DNA-binding domain 139 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi2g06052 302 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 36 217 IPR044810 GO:0003700
Vivi2g06052 302 Pfam WRKY DNA -binding domain 145 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06052 Vivi-Chr2 192834770 192837919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06052 127 227 WRKY Transcription Factor Family AT5G22570 43.243 3.80e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi2g06052 WRKY 3.7e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06052 - - psat:127081893 446.432