Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06047 ATGGAAGGTCCAATTCCTCCTGCCGTATCTGTCTTGAAAAATTTGACGGAATTGAGAATATCTGATTTGAAGGGGAACAAAACCATGTCATTTCCTGATCTCAAAGGTTTGAAATTCATGACAAGACTGGAATTGCGAAGTTGTTTAATTGCTGGTCCTATTCCAGATTACATTGGTGAAATGCGGAATTTAAAAGAACTAGATTTGAGCTTCAATAGCTTGACTGGTCCAATTCCAGATTCATTTCAGAAATTGGAATTCATCAATCTCATGTTTCTGACAAATAACTTTCTGAGCGGAACAACTCCAGCATGGATACTGAGCAGCAATCAGCATATTGATTTATCTTTCAACAACTTTACCAAGTCTTCTGCATCTAATTGCCAGCTCTTGGACGTGAACTTAGCCTCGAGTGTCTCTCCTTCAGCAAACACTTCATTGTCTTGTTTGAAGAGGAACCAACCTTGTTCAGGAAAACCACGGTACCATTCACTGTTCATAAATTGTGGAGGACCTGCAATTTATGAATACGAAGCCGATGAGAATTTACGCGGAATTTCAAACTTTTTTATAAGCAATGATGGAAGATGGGCTTATAGCAGCACAGGAGTATATACAGGAACTTCTGAAGCAAATTCTGTGGCTAAAAATATCTTCTCTTTGAACATTAATGGCTCTGAATACTACCAGACAGCCCGCGTCGCAGCGATGTCTCTTTACTACTTTGGATTTTGTATGTTGAAGGGAAACTATAATGTGAAGCTTCATTTTGCTGAGATCATGTTTTCGGATGACCAGACATTTAGCAGCCATGGAAAGCGCATATTCGATGTTTCGATTCAAGGTTTTAAGTATTTGAAAGACTTCAACATCACGAAAGAAGCTGGTGGAGTTGGCAAGGGAATTACTCGAGACTTCAATGTTGATGTTAATGATAACACCTTGCAAATCCACTTATATTGGGCCGGAAAAGGAACAAATGCAATTCCTAAGAGAGGTGTATATGGACCTCTTATATCTGCTATCACTGTGACCCCAAACTTTGAAATTCCTTCAAATGGGTTGCCTGCTGGAGCCATTGTTGGAATTGTGGTAGGATCATTGGCGCTTGTTACGCTGATGATACTTTTTGTTTGTTGGAAGATGGGTTACATTTGTGGAAAAGATATAAGAGACAGAGAGCTAAGGGAATTGAAAACTGGCTATTTCAGTTTGAGACAACTGAAACTTGCAACCAATAACTTTGATCAACAAAATAAGATTGGTGAAGGAGGATTCGGACCCGTTTACAAGGGTATAATGCCAGATGGTGATGTGATTGCTGTTAAACAGCTCTCATCTAAATCAAAGCAAGGGAATCGCGAATTCGTAAATGAAATAGGCATTATATCTGCATTGCAGCATCCCAACCTTGTGAAACTTTATGGGTGTTGCATTGAAGGAAGCCAGTTACTGCTCATTTATGAATACATGGAAAACAATAGTCTTGCTCGGGCCCTTTTTGGTAAACCAGAGCAAAGGATGAAGTTGGATTGGCACACGAGAATGAAAATCTGCGTGGGGATTGCAAAAGGCTTATCCTATCTTCACGACGAGTCAAGGCTGAAGATAATCCACAGAGATATTAAGTCGGCTAATGTCTTGCTTGATAAGAATCTGAATGCTAAGATTTCGGATTTTGGTTTAGCCAAGCTGGACGAAGGAAATACTCATATCAGCACCCGAGTTGCGGGGACAATGTAA 1743 0.3993 MEGPIPPAVSVLKNLTELRISDLKGNKTMSFPDLKGLKFMTRLELRSCLIAGPIPDYIGEMRNLKELDLSFNSLTGPIPDSFQKLEFINLMFLTNNFLSGTTPAWILSSNQHIDLSFNNFTKSSASNCQLLDVNLASSVSPSANTSLSCLKRNQPCSGKPRYHSLFINCGGPAIYEYEADENLRGISNFFISNDGRWAYSSTGVYTGTSEANSVAKNIFSLNINGSEYYQTARVAAMSLYYFGFCMLKGNYNVKLHFAEIMFSDDQTFSSHGKRIFDVSIQGFKYLKDFNITKEAGGVGKGITRDFNVDVNDNTLQIHLYWAGKGTNAIPKRGVYGPLISAITVTPNFEIPSNGLPAGAIVGIVVGSLALVTLMILFVCWKMGYICGKDIRDRELRELKTGYFSLRQLKLATNNFDQQNKIGEGGFGPVYKGIMPDGDVIAVKQLSSKSKQGNREFVNEIGIISALQHPNLVKLYGCCIEGSQLLLIYEYMENNSLARALFGKPEQRMKLDWHTRMKICVGIAKGLSYLHDESRLKIIHRDIKSANVLLDKNLNAKISDFGLAKLDEGNTHISTRVAGTM 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06047 580 FunFam Os07g0541700 protein 491 579 - -
Vivi2g06047 580 Gene3D Ribonuclease Inhibitor 1 160 IPR032675 -
Vivi2g06047 580 SMART serkin_6 415 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06047 580 Gene3D - 163 347 - -
Vivi2g06047 580 Gene3D Transferase(Phosphotransferase) domain 1 491 580 - -
Vivi2g06047 580 ProSiteProfiles Protein kinase domain profile. 415 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06047 580 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 580 - -
Vivi2g06047 580 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 162 347 - -
Vivi2g06047 580 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 386 490 - -
Vivi2g06047 580 Pfam Malectin domain 165 342 IPR021720 -
Vivi2g06047 580 SUPERFAMILY L domain-like 5 126 - -
Vivi2g06047 580 SUPERFAMILY Protein kinase-like (PK-like) 398 579 IPR011009 -
Vivi2g06047 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Vivi2g06047 580 Pfam Protein kinase domain 416 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06047 580 Gene3D Phosphorylase Kinase; domain 1 386 490 - -
Vivi2g06047 580 Pfam Leucine Rich Repeat 63 85 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06047 Vivi-Chr2 192706499 192709854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06047 1 580 Receptor kinase-like Gene Family AT1G53440 59.865 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi2g06047 Malectin 8.4e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06047 - - gmx:121173337 860.522