Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06020 ATGTCAAGCTTCAAACATGTATCCATGTTCTTCTTTTTGTTTCTGGCTTTCAATTGTTTCTCTTTGCTTGGATCCAACGCTAAAGTCCTACCACAAGATGAAGTGAAATTGCTCCAAACAATATCAGACAAGTTAGAAAACTTAAATTGGAAGGTTACACAAGGTTCTTGCAATGATGATAATGGATTTGGTAACAAGAATATTTCAAAGGATATTTTAAGCAGTGTCACATGTGATTGTACTTTCAACTCTAGCACTGTCTGCCATGTCACAAACATCTTGCTCAAGGGTCTGAATATATCTGGAGTTATTCCAAATGAATTTGGAAATCTCACTCAACTCAAAGTACTTGATCTCTCTAGGAATTACTTAAATGGTTCAATTCCAAAGAGTCTTGGAGTCCTCTCACTTGTGACATTGGCATTTTTGGGAAATCAGCTTAGTGGTCCAATTCCCTCAGAACTTGGTAACATTGCAACACTACAAGAACTGACCTTAGAGGATAATCTACTTGAAGGACCTCTTCCTTCTAGCCTTGGAAATTTGAAACACTTGGAGGATTTAAAGCTTTCTGCAAATAATTTTACAGGGAGGATACCAGAATCATATGGAAATCTGAAGAATCTCACTGATTTTAGGCTAGACGGAAGCAGTTTATCTGGGAAAATTCCGAGTTTTATTGGAAACTGGACGAAACTTGAAAGATTGGATTTGCAAGGCACGTCGATGGAAGGTCCAATTCCTCCTGCTATATCTCTCTTGAAAAGTTTGAAGGAATTGAGAATATCTGATTTGAAGGGGAACACAACCATGGCATTTCCTGATCTGAAAAATTTGACACGCATGACGAAACTGGAATTGAGAAATTGCTTAATCAGTGGTCCTATTTTAGACTCCATTGGTGAATTGGAAAATTTAAAAACTCTAGATTTGAGCTCCAATAGATTGACCGGTCCAATTCCAGATTCATTTGAGAACTTGGAAGCTATCAATTTCATGTTTCTGACCAACAACTCTCTAAATGGAACAACTCCCGGATGGATATTGACCAACAAACATAACTTTGATTTATCTTTCAACAATTTTTCCGAGTCTTCTGCAACTACTTGCCAGCCCTTGGACGTGAACTTAGCCTCGAGCGTCTCTTCTTCAGCAAACACTTCACTGTCTTGTTTGAAGGCGAACCTACCTTGTTCGGGAAAATCTCAGTATCACTCATTGTATATAAATTGTGGAGGACCCGCAATAGAGGTTGATGACAAAGAATATGAAGCCGACGAACATTTACGTGGAATTTCGAACTTTGTTGAAAGTCCTGATGGAAAATGGGCTTATAGCAGCACAGGAGTATTTCTAGGAAATGAAAAAGCTGATTATGTGGCAACAAATGTTTTCTCTTTGGATATTAATGGCTCTGGATACTACCAAACAGCCCGCATTGCGCCGATATCTCTTAACTACTTTGGATTTTGTATGATGAAGGGAAACTATAATGTGAAACTTCATTTTGCTGAGATAATGTTTTCTAATGACCGGACATTTAGCAGCCTTGGAAGGCGCATATTCGATGTTTCAATTCAAGGTCATAAATATTTAAAAGACTTTAACATTATGGAAGAAGCCGGCGGAGTTGGCAAGGGAATTACTAAGGACTTTAATGTTGATGTTAATGAAAGCACCTTGCAAATCCACTTATCTTGGGCAGGAAAAGGAACTAATGCAATTCCTATGCGAGGTGTATATGGACCACTTATATCTGCTATCACCGTGACCCCAAACTTTAAAATTCCTTCGAATGGTTTGTCTGCTGGAGCAATTGCTGGAATTGTGATTGGATCATTGGCATTTGTTTTGCTGATACTCTTTGTCCTTTGGAAGATGGGTTACATTTTTCGGAAAGATCAAACAGACAAAGAACTCCTAGAATTGAAAACGGGCTATTTCAGTTTGAGACAAATTAAAGCTGCTACTAATAACTTTGATCTAGTAAATAAGATAGGTGAAGGAGGATTTGGGCCTGTTTACAAGGGTATACTGTCAGATGGTGCTGTGATTGCGGTTAAACAGCTCTCGTCGAAATCAAAGCAAGGGAACCGTGAATTCGTAAACGAAATAGGCATGATATCTGCTTTGCAGCATCCCAATCTTGTGAAACTTTATGGATGTTGCATTGAAGGAAACCAATTGCTGCTTGTATATGAATACATGGAGAACAATAGTCTTGCTCGCGCTATTTTCGGTAAGCCAGAACAAAAGTTGAACTTGGACTGGCGCACGAGGATGAAGATTTGTGTAGGGATAGCAAGAGGGTTAGCCTATCTTCATGAGGAATCAAGGCTGAAAATAGTACACAGAGATATTAAGGCAACTAATGTCTTACTCGATAAGCATCTGAATGCCAAGATCTCTGATTTCGGTTTAGCCAAGCTTGATGAAGAAGAAAACACTCATATCAGCACGCGAATAGCTGGGACAATAGGCTACATGGCTCCTGAGTATGCTATGCGGGGTTACTTGACCGACAAAGCAGATGTATATAGTTTTGGAGTTGTAGCCTTAGAGATTGTAAGTGGAATGAGCAACACGAATTATAGGCCAAAAGAGGAATTTGTTTATCTTCTGGATTGGGCTTATGTTCTCCAAGAACAAGGAAACCTTCTGGAATTGGTGGATCCAAGTCTCGGTTCAAAGTACTCATCAGAGGAGGCCATGAGAATGCTGCAATTGGCACTCCTTTGCACCAATCCATCTCCAACTCTTAGACCACCAATGTCATCTGTAGTAAGCATGCTTGAAGGAAACACTCCAATTCAAGCGCCGATCATCAAGCGAAGCGATAGTACAAGTGGTGCAAGATTTAAAGCCTTTGAGCTTCTATCACATGATAGCCAAACTAATGTTTCTTCAACATCCTTACAAGATAGTAGAGAGCTAAGAGGCAAATCAATGGATGGACCATGGGTTGATTCTTCCATATCTTATCCAAGTAAAGATTATTCTTCATCTGATAGGCTTATTTGA 3021 0.3932 MSSFKHVSMFFFLFLAFNCFSLLGSNAKVLPQDEVKLLQTISDKLENLNWKVTQGSCNDDNGFGNKNISKDILSSVTCDCTFNSSTVCHVTNILLKGLNISGVIPNEFGNLTQLKVLDLSRNYLNGSIPKSLGVLSLVTLAFLGNQLSGPIPSELGNIATLQELTLEDNLLEGPLPSSLGNLKHLEDLKLSANNFTGRIPESYGNLKNLTDFRLDGSSLSGKIPSFIGNWTKLERLDLQGTSMEGPIPPAISLLKSLKELRISDLKGNTTMAFPDLKNLTRMTKLELRNCLISGPILDSIGELENLKTLDLSSNRLTGPIPDSFENLEAINFMFLTNNSLNGTTPGWILTNKHNFDLSFNNFSESSATTCQPLDVNLASSVSSSANTSLSCLKANLPCSGKSQYHSLYINCGGPAIEVDDKEYEADEHLRGISNFVESPDGKWAYSSTGVFLGNEKADYVATNVFSLDINGSGYYQTARIAPISLNYFGFCMMKGNYNVKLHFAEIMFSNDRTFSSLGRRIFDVSIQGHKYLKDFNIMEEAGGVGKGITKDFNVDVNESTLQIHLSWAGKGTNAIPMRGVYGPLISAITVTPNFKIPSNGLSAGAIAGIVIGSLAFVLLILFVLWKMGYIFRKDQTDKELLELKTGYFSLRQIKAATNNFDLVNKIGEGGFGPVYKGILSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARAIFGKPEQKLNLDWRTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGMSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSKYSSEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLEGNTPIQAPIIKRSDSTSGARFKAFELLSHDSQTNVSSTSLQDSRELRGKSMDGPWVDSSISYPSKDYSSSDRLI 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06020 1006 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 963 - -
Vivi2g06020 1006 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 34 198 - -
Vivi2g06020 1006 SUPERFAMILY Protein kinase-like (PK-like) 643 932 IPR011009 -
Vivi2g06020 1006 Gene3D - 407 593 - -
Vivi2g06020 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase 736 943 - -
Vivi2g06020 1006 Gene3D Transferase(Phosphotransferase) domain 1 736 945 - -
Vivi2g06020 1006 SMART serkin_6 660 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06020 1006 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 593 - -
Vivi2g06020 1006 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515
Vivi2g06020 1006 CDD STKc_IRAK 666 933 - -
Vivi2g06020 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 199 266 - -
Vivi2g06020 1006 ProSiteProfiles Protein kinase domain profile. 660 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06020 1006 Gene3D Phosphorylase Kinase; domain 1 627 735 - -
Vivi2g06020 1006 Gene3D Ribonuclease Inhibitor 160 225 IPR032675 -
Vivi2g06020 1006 Gene3D Ribonuclease Inhibitor 35 159 IPR032675 -
Vivi2g06020 1006 PRINTS Leucine-rich repeat signature 303 316 - -
Vivi2g06020 1006 PRINTS Leucine-rich repeat signature 114 127 - -
Vivi2g06020 1006 Pfam Protein tyrosine and serine/threonine kinase 662 930 IPR001245 GO:0004672|GO:0006468
Vivi2g06020 1006 Pfam Leucine rich repeat 281 340 IPR001611 GO:0005515
Vivi2g06020 1006 Pfam Malectin domain 407 588 IPR021720 -
Vivi2g06020 1006 Gene3D Ribonuclease Inhibitor 226 406 IPR032675 -
Vivi2g06020 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Vivi2g06020 1006 MobiDBLite consensus disorder prediction 966 1006 - -
Vivi2g06020 1006 ProSiteProfiles Leucine-rich repeat profile. 305 327 IPR001611 GO:0005515
Vivi2g06020 1006 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 735 - -
Vivi2g06020 1006 SUPERFAMILY L domain-like 67 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06020 Vivi-Chr2 191722817 191732094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06020 10 1000 Receptor kinase-like Gene Family AT1G53440 63.304 0.0 1248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi2g06020 PK_Tyr_Ser-Thr 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06020 - - gmx:121173337 1497.26